Encoding: UTF-8
Package: geneExpressionFromGEO
Title: Easily Downloads a Gene Expression Dataset from a GEO Code and
        Retrieves the Gene Symbols of Its Probesets
Version: 1.3
Authors@R: person("Davide", "Chicco", email = "davidechicco@davidechicco.it", comment = c(ORCID = "0000-0001-9655-7142"),
                  role = c("aut", "cre"))
Description: A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optionally) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293,  GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. More information can be found in the following manuscript: Davide Chicco, "geneExpressionFromGEO: an R package to facilitate data reading from Gene Expression Omnibus (GEO)". Microarray Data Analysis, Methods in Molecular Biology, volume 2401, chapter 12, pages 187-194, Springer Protocols, 2021, <doi:10.1007/978-1-0716-1839-4_12>.
BugReports: https://github.com/davidechicco/geneExpressionFromGEO/issues
Depends: R (>= 3.1.0)
License: GPL-3
URL: https://github.com/davidechicco/geneExpressionFromGEO
Imports: xml2, Biobase, annotate, GEOquery, utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-12-09 09:33:24 UTC; davide
Author: Davide Chicco [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Repository: CRAN
Date/Publication: 2025-12-09 10:10:02 UTC
Built: R 4.6.0; ; 2026-04-25 19:10:55 UTC; unix
