R: GEMMA Multivariate Linear Mixed Model

# GEMMA Multivariate Linear Mixed Model

## Documentation for package ‘gemma2’ version 0.1.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calc_omega | Calculate Omega matrices
calc_qi | Calculate Qi (inverse of Q) and log determinant of Q
calc_sigma | Calculate Sigma_ee and Sigma_uu matrices
calc_XHiY | Calculate XHiY
center_kinship | Center a relatedness matrix, after Zhou's GEMMA function CenterMatrix
eigen2 | Calculate eigendecomposition and return ordered eigenvalues and eigenvectors
eigen_proc | Eigendecomposition procedure for Vg and Ve
gemma2 | gemma2
MphCalcLogL | Calculate log likelihood
MphEM | Perform expectation-maximization algorithm to infer Vg and Ve values for a pair of traits.
stagger_mats | Stagger matrices within a larger, block-diagonal matrix
UpdateRL_B | Update B for restricted log likelihood
update_e | Update E
update_u | Update U matrix
update_v | Update V_e and V_g