R: A Generalized Joint Location and Scale Framework for Association Testing

# A Generalized Joint Location and Scale Framework for Association Testing

## Documentation for package ‘gJLS2’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

chrXdat | X-chromosomal example using the 1000 Genomes Project data
gJLS2 | A Generalized Joint-Location-Scale (gJLS) Test
gJLS2s | generalized Joint-Location-Scale (gJLS) test with summary statistics
leveneRegA_per_SNP | The generalized Levene's test via a two-stage regression for variance homogeneity by SNP genotype (autosomes)
leveneRegX_per_SNP | Levene's regression tests for variance homogeneity by SNP genotype (X-chromosome specific)
leveneTests_per_SNP | Levene's test for variance homogeneity by SNP genotypes (sex-specific p-values)
locReg | Location (mean-based association) test
scaleReg | Scale (variance-based association) test