Package: func2vis
Type: Package
Title: Clean and Visualize Over Expression Results from
        'ConsensusPathDB'
Version: 1.0-3
Date: 2023-03-16
Author: Raghvendra Mall [aut, cre]
Authors@R: c(person(given = "Raghvendra",family = "Mall",role = c("aut","cre"), email = "raghvendra5688@gmail.com"))
Maintainer: Raghvendra Mall <raghvendra5688@gmail.com>
Repository: CRAN
Description: Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, 
    protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' 
    from gene set over-expression analysis. Performs clustering of pathway based on similarity 
    of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) 
    when up and down regulated genes are known. The methods are described in a paper currently
    submitted by Orecchioni et al, 2020 in Nanoscale.
License: GPL (>= 3)
LazyLoad: true
Depends: ggplot2, igraph, devtools, ggrepel, grDevices, randomcoloR, R
        (>= 4.0)
NeedsCompilation: yes
Packaged: 2023-03-16 13:48:54 UTC; raghvendra
Date/Publication: 2023-03-16 17:30:02 UTC
RoxygenNote: 7.1.1
Built: R 4.6.0; ; 2026-04-25 13:00:52 UTC; unix
