aparcs_to_bg            Convert Freesurfer aparcs Table to brainGraph
aparcstats2table        Parcellation Stats to Table
aparcstats2table.help   Parcellation Stats to Table Help
asegstats2table         Parcellation Stats to Table
asegstats2table.help    Parcellation Stats to Table Help
check_fs_result         Check Freesurfer Result
checkmnc-methods        Force object to filename with .mnc extension
construct_subj_dir      Construct Subject Directory
convert_surface         Convert Freesurfer Surface
freesurfer_read3        Freesurfer Read 3 records
freesurfer_read3_con    Freesurfer Read 3 records
freesurfer_read_curv    Read Freesufer Curv file
freesurfer_read_surf    Read Freesurfer Surface file
freesurferdir           Get Freesurfer's Directory
fs_cmd                  FS Command Wrapper
fs_help                 Wrapper for getting Freesurfer help
fs_imgext               Determine extension of image based on
                        FSLOUTPUTTYPE
fs_lut                  Freesurfer look up table (LUT)
fs_subj_dir             Determine Freesurfer Subjects Directory
fs_version              Find Freesurfer Version
get_fs                  Create command declaring FREESURFER_HOME
get_fs_output           Determine Freesurfer output type
have_fs                 Logical check if Freesurfer is accessible
mnc2nii                 Convert MNC to NIfTI
mnc2nii.help            MNC to NIfTI Help
mri_convert             Use Freesurfers MRI Converter
mri_convert.help        MRI Normalize Help
mri_deface              MRI Deface
mri_info                MRI information
mri_info.help           MRI information Help
mri_mask                Use Freesurfers MRI Mask
mri_mask.help           MRI Normalize Help
mri_normalize           Use Freesurfers MRI Normalize Algorithm
mri_normalize.help      MRI Normalize Help
mri_segment             Use Freesurfers MRI Segmentation Algorithm
mri_segment.help        MRI Segment Help
mri_surf2surf           Use Freesurfers 'mri_surf2surf' function to
                        resamples one cortical surface onto another
mri_surf2surf.help      Freesurfers mri_surf2surf Help
mri_synthstrip          Use Freesurfers MRI SynthStrip
mri_synthstrip.help     MRI Normalize Help
mri_watershed           Use Freesurfers MRI Watershed Algorithm
mri_watershed.help      MRI Watershed Help
mris_convert            Use Freesurfers MRIs Converter
mris_convert.help       Help file for Freesurfers MRIs Converter
mris_convert_annot      Convert Annotation file
mris_convert_curv       Convert Curvature file
mris_convert_normals    Convert Surface to Surface normals
mris_convert_vertex     Convert Surface to vertex file
mris_euler_number       MRI Euler Number
mris_euler_number.help
                        MRI Euler Number Help
nii2mnc                 Convert NIfTI to MNC
nii2mnc.help            Convert NIfTI to MNC Help
nu_correct              Use Freesurfers Non-Uniformity Correction
nu_correct.help         Non-Uniformity Correction Help
read_annotation         Read Freesurfer annotation file
read_aseg_stats         Read Anatomical Segmentation Statistics
read_fs_label           Read Label File
read_fs_table           Read Freesurfer Table Output
readmgz                 Read MGH or MGZ File
readmnc                 Read MNC File
recon                   Reconstruction from Freesurfer
recon_all               Reconstruction from Freesurfer for All Steps
recon_con1              Reconstruction from Motion Correction to Skull
                        Strip
reconner                Reconstruction Helper for recon from Freesurfer
run_check_fs_cmd        Run and Check a Freesurfer Command
set_fs_subj_dir         Set Freesurfer Subjects Directory
surf_convert            Convert Surface Data to ASCII
surface_to_obj          Convert Freesurfer Surface to Wavefront OBJ
surface_to_triangles    Convert Freesurfer Surface to Triangles
trac_all                Tract Reconstruction Helper for trac-all from
                        Freesurfer for All Steps
trac_prep               Tract Reconstruction for Each Step
tracker                 Tract Reconstruction Helper for trac-all from
                        Freesurfer
