R: Palaeoecological and Palaeogeographical Analysis Tools

# Palaeoecological and Palaeogeographical Analysis Tools

## Documentation for package ‘fossil’ version 0.4.0

- DESCRIPTION file

## Help Pages

fossil-package | fossil: Palaeoecological and Palaeogeographical Analysis Tools
ACE | Abundance- and Incidence-based Coverage Estimators
adj.rand.index | Rand Index and Adjusted Rand Index
aic.nest | Nestedness of samples using AIC
bootstrap | Bootstrap Species Richness Estimator
braun.blanquet | Similarity/Dissimilarity Indices
bray.curtis | Similarity/Dissimilarity Indices
chao.jaccard | Chao's Jaccard and Sorenson Estimators of Shared Species
chao.sd | Chao's estimation of standard error
chao.sorenson | Chao's Jaccard and Sorenson Estimators of Shared Species
chao1 | Chao's Species Estimators
chao2 | Chao's Species Estimators
coi | Cohesiveness Index for Relational Clustering
create.lats | Creating a table of Latitudes and Longitudes
create.matrix | Creating species locality matrices
deg.dist | Haversine Distance Formula
dino.dist | Creating a Distance Matrix
dino.msn | Calculate a Minimum Spanning Tree or Network
dino.mst | Calculate a Minimum Spanning Tree or Network
earth.bear | Bearings Between Geographic Locations
earth.dist | Calculating Geographic Distances
earth.poly | Calculating a Minimum Convex Polygon
earth.tri | Calculating the Surface Area Enclosed by Three Geographic Points
ecol.dist | Creating a Distance Matrix
euclidean | Similarity/Dissimilarity Indices
euler.rot | Calculate the Euler Rotation of a Point
fdata.lats | A Sample Species Abundance Dataset
fdata.list | A Sample Species Abundance Dataset
fdata.mat | A Sample Species Abundance Dataset
fossil | fossil: Palaeoecological and Palaeogeographical Analysis Tools
ICE | Abundance- and Incidence-based Coverage Estimators
int.chao | Internal function for chao estimators
jaccard | Similarity/Dissimilarity Indices
jack1 | First- and second-order jacknife estimators
jack2 | First- and second-order jacknife estimators
kulczynski | Similarity/Dissimilarity Indices
lats2Shape | Converting a Table of Latitudes and Longitudes to a Shapefile
loc.map | Mapping Points on a Global Map
localoptima | Function to Find Local Optimization for clustering
manhattan | Similarity/Dissimilarity Indices
morisita.horn | Similarity/Dissimilarity Indices
msn.map | Mapping a Minimum Spanning Tree
msn2Shape | Convert a Minimum spanning Network or Tree to Shapefile
mstlines | Display a Minimum Spanning Tree or Network
new.lat.long | Find a New Latitude and Longitude
nmds.mst | Creating NMDS plots with overlain Minimum Spanning Trees
ochiai | Similarity/Dissimilarity Indices
rand.index | Rand Index and Adjusted Rand Index
rclust | Relational Clustering
rclust.dist | Relational Clustering
rclust.null | Relational Clustering
rclust.weights | Relational Clustering
relational.clustering | Relational Clustering
sac | Calculate Species Area Curves
sim.occ | Simulated Species Occurrence data
simpson | Similarity/Dissimilarity Indices
sorenson | Similarity/Dissimilarity Indices
spp.est | Estimating Species Diversity
tri.ineq | Testing for the Triangle Inequality