R: A General Framework for Flexible Multi-State Survival Modelling

# A General Framework for Flexible Multi-State Survival Modelling

## Documentation for package ‘flexmsm’ version 0.1.2

- DESCRIPTION file

## Help Pages

flexmsm-package | flexmsm: Flexible Multi-State Modelling
conv.check | Convergence diagnostics on fitted model output.
flexmsm | flexmsm: Flexible Multi-State Modelling
fMmsm | Flexible transition intensity based models for two dependant multistate processes
fmsm | Flexible transition intensity based models for univariate multistate processes
fmsmObject | Fitted fmsmObject object
IDM_cav | Cardiac allograft vasculopathy (CAV) data
LikGradapproxHess.general | Likelihood, gradient and Hessian for univariate transition intensity based models
LikGradHess.CM | Likelihood, gradient and Hessian for univariate transition intensity based models for the base dependence model.
LikGradHess.general | Likelihood, gradient and Hessian for univariate transition intensity based models
logLik.fmsm | Extract the log likelihood for the fitted multistate model
P.pred | Predict and plot the transition probabilities
plot.fmsm | Function to plot the smooths included in the model specifications.
print.fmsm | Print a fmsm object
print.summary.fMmsm | Flexible transition intensity based models for univariate multistate processes
print.summary.fmsm | Flexible transition intensity based models for two dependant multistate processes
Q.matr.setup.general | Internal function
Q.pred | Predict and plot the transition intensities
simulateIDM | Function to predict and plot the estimated transition intensities (and confidence intervals).
state.pairs.CT | Function to extract state pair counts and observed (right) times.
summary.fMmsm | Summary for fitted model ouput.
summary.fmsm | Summary for fitted model ouput.