abind_list              Combine multi-dimensional arrays with lists
collapse_na             Collapse strings of repeated NAs in a vector
                        with numeric names
collapse_na_array       Collapse blocks of NAs in an array with numeric
                        dimension names
comb_vec_to_param_array
                        Determine array of destination parameters from
                        a source vector
contour_pipe            Plot Spectra Contours
coupling_param_idx      Get a list of logical arrays indicating which
                        parameters correspond to scalar couplings
extract_params          Extract parameters from fit object for use with
                        make_fit_input
fit_footprint           Determine the region of a spectrum containing
                        the majority of the fit peaks
fit_peak_cluster        Fit a cluster of nearby peaks starting from a
                        seed table of chemical shifts
fit_peak_iter           Iterative Peak Fitting
fit_peaks               Fit peaks from a table of chemical shifts
fitnmr-package          fitnmr Package Overview
get_spec_int            Get arrays of spectral intensities for input,
                        starting parameters, and fit peaks
get_spec_peak_int       Get spectra for individual peaks
height_assign           Calculate mapping from assigned peak list onto
                        an unknown peak list
infer_acquisition_time
                        Infer acquisition time for each dimension
infer_aliasing          Infer which dimension was directly acquired
infer_direct            Infer which dimension was directly acquired
infer_sweep_width       Infer original sweep width for each dimension
limit_omega0_by_r2      Add upper/lower limits based on the r2 value
make_coupling_mat       Make a multiplet matrix with weights and scalar
                        coupling coefficients
make_fit_input          Prepare input data structure for peak fitting
make_map                Create a sparse axis map
make_param_list         Make a parameter list for a set of spectra and
                        chemical shifts
nmr_pipe                Process an FID with NMRPipe
nmrpipe_ft              Fourier transform a 1D FID
nmrpipe_fti             Inverse Fourier transform a 1D spectrum
nmrpipe_ps              Inverse Fourier transform a 1D spectrum
nmrpipe_sp              Apply sine-based window function to a 1D FID
nmrpipe_zf              Apply zero filling to a 1D FID
noise_estimate          Estimate Noise
omega0_comb_source_idx
                        Get the first index in the omega0 array
                        corresponding to each TRUE value in omega0_idx
omega0_param_idx        Get a list of logical arrays indicating which
                        parameters correspond to peak positions
param_array_to_comb_vec
                        Determine vector of source parameters from
                        destination array via least squares
param_list_to_arg_list
                        Convert a list of parameters for use with
                        make_fit_input
param_list_to_peak_df   Convert Fit to Data Frame
param_list_to_tables    Convert a parameter list into a set of tables
                        with resonance/nuclei/couplings
param_values            Get/set a subset of fitting parameters
                        specified by a list of logical vectors
peak_bind               Combine parameter lists referring to different
                        peaks
peak_df_to_fit_input    Convert a peak data frame to fit input
peak_df_to_param_list   Convert a peak data frame to a parameter list
perform_fit             Perform a fit with an input data structure
plot_fit_1d             Plot a one dimensional peak fit
plot_fit_2d             Plot a two dimensional peak fit
plot_peak_df            Plot Peaks from a Peak Table
plot_resonances_1d      Plot resonances from 1D fit
plot_resonances_2d      Plot resonances from 2D fit
plot_resonances_3d      Plot resonances from 3D fit
plot_sparse_1d          Plot spectrum from 1D fit
plot_sparse_2d          Plot spectrum from 2D fit
ppm_to_pts              Convert PPM values to points
read_nmrdraw_peak_tab   Read an NMRDraw formatted peak table
read_nmrpipe            Read NMRPipe spectrum
resonance_to_param_list
                        Convert data frame of resonances into a
                        parameter list
sim_time_nd             Simulate an FID using the NMRPipe SimTimeND
                        function
spec_bind               Combine parameter lists referring to different
                        spectra
spec_overlap_mat        Determine a matrix of fractional peak overlap
split_coupling_names    Split string of scalar coupling names
tables_to_param_list    Convert tables with resonance/nuclei/couplings
                        to a parameter list
update_fit_bounds       Update bounds on fitting parameters
whz_to_pts              Convert widths in Hz into points
write_nmrdraw_peak_tab
                        Write an NMRDraw formatted peak table
