R: Transform Files to 'microtable' Object with 'microeco' Package

# Transform Files to 'microtable' Object with 'microeco' Package

## Documentation for package ‘file2meco’ version 0.9.1

- DESCRIPTION file

## Help Pages

check_match_table | Replace the names use match table
check_sample_table | Read sample table
CHOCOPhlAn_taxonomy | The CHOCOPhlAn_taxonomy data
file2meco | Introduction to file2meco package (https://github.com/ChiLiubio/file2meco)
humann2meco | Transform 'HUMAnN' metagenomic results to 'microtable' object.
meco2phyloseq | Transform 'microtable' object of 'microeco' package to the 'phyloseq' object of 'phyloseq' package <doi:10.1371/journal.pone.0061217>.
meco2tse | Transform 'microtable' object of 'microeco' package to the 'TreeSummarizedExperiment' object of 'TreeSummarizedExperiment' package <doi:10.12688/f1000research.26669.2>.
MetaCyc_pathway_map | The MetaCyc_pathway_map data
metacyc_pathway_website | Get the website for a 'MetaCyc' pathway name
mpa2meco | Transform metagenomic classification results of 'mpa' format to 'microtable' object.
ncyc2meco | Transform 'NCycDB' or 'PCycDB' metagenomic abundance to 'microtable' object.
ncyc_map | The ncyc_map data
pcyc_map | The pcyc_map data
phyloseq2meco | Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.
qiime1meco | Transform 'QIIME' results to 'microtable' object.
qiime2meco | Transform 'QIIME2' results to 'microtable' object.
tse2meco | Transform the 'TreeSummarizedExperiment' object to 'microtable' object of 'microeco' package.
vs2meco | Transform viromescan results to 'microtable' object.