CompCor                 Anatomical CompCor
CompCor_HCP             Anatomical CompCor for HCP NIFTI and CIFTI data
Mode                    Mode of data vector
PCA                     PCA for tall matrix
UT2mat                  Upper Triangular Vector to Matrix
all_binary              All binary?
all_integers            All integers?
as.matrix_ifti          Convert CIFTI, NIFTI, or GIFTI input to T
                        \times V matrix
bandstop_filter         Bandstop filter
carpetplot              Carpetplot
carpetplot_stack        Stacked carpetplot
colCenter               Center matrix columns
color_palette           Color palette
coordlist_to_vol        Convert coordinate list to 3D array
crop_vol                Crop a 3D array
dct_bases               Generate cosine bases for the DCT
dct_convert             DCT and frequency conversion
despike_3D              3dDespike from AFNI
dice_overlap            Dice overlap
dilate_mask_vol         Dilate 3D mask
dual_reg                Dual Regression
dual_reg_parc           Multiple regression for parcel data
erode_mask_vol          Erode 3D mask
expand_RPs              Expand realignment parameters (RPs)
fMRItools               fMRItools: Routines for Common fMRI Processing
                        Tasks
fsl_bptf                'bptf' function from FSL
hat_matrix              Hat matrix
infer_format_ifti       Infer fMRI data format
infer_format_ifti_vec   Infer fMRI data format for several inputs
is_1                    Is this object the expected data type, and
                        length one?
is_constant             Is this numeric vector constant?
is_integer              Is this an integer?
is_posNum               Is this object a positive number? (Or
                        non-negative)
mat2UT                  Matrix to Upper Triangular Vector
match_exactly           Do these character vectors match exactly?
match_input             Match user inputs to expected values
mean_squares            Compute mean squares from variance
                        decomposition
norm_BOLD               Normalize BOLD data
nuisance_regression     Nuisance regression
pad_vol                 Pad 3D Array
pct_sig                 Convert data values to percent signal.
plot_FC                 Plot FC
plot_FC_gg              Plot FC with ggplot2
read_nifti              Wrapper to functions for reading NIFTIs
scale_design_mat        Scale a design matrix
scale_med               Robust scaling
scale_timeseries        Scale the BOLD timeseries
sign_flip               Sign match ICA results
skew_pos                Positive skew?
sum_neighbors_vol       Sum of each voxel's neighbors
temporal_filter         Temporal filtering (bandpass, highpass,
                        lowpass) with DCT or FFT
unmask_mat              Unmask matrix data
unvec_mat               Transform vector data to image
unvec_vol               Convert vectorized data back to volume
validate_design_mat     Validate design matrix
var_decomp              Compute variance decomposition
vox_locations           Get coordinates of each voxel in a mask
