Package: extBatchMarking
Type: Package
Title: Extended Batch Marking Models
Version: 1.1.0
Date: 2024-10-04
Maintainer: Kehinde Olobatuyi <olobatuyikenny@uvic.ca>
Authors@R: 
    c(person(given = "Kehinde",
            family = "Olobatuyi",
            role = c("aut", "cre"),
            email = "olobatuyikenny@uvic.ca",
            comment = c(ORCID = "0000-0002-4635-7895")),
      person(given = "Simon",
            family = "Johns",
            role = c("aut"),
            email = "simon737@outlook.com"),      
      person(given = "Matthew RP",
            family = "Parker",
            role = c("aut"),
            email = "mrparker909@gmail.com",
            comment = c(ORCID = "0000-0003-3021-7959")),
      person(given = "Steve",
            family = "Hof",
            role = c("aut"),
            email = "steven.Hof@icloud.com"),
      person(given = "Laura LE",
            family = "Cowen",
            role = c("aut"),
            email = "lcowen@uvic.ca",
            comment = c(ORCID = "0000-0002-0853-1450")) )
Description: A system for batch-marking data analysis to estimate survival probabilities, capture probabilities, and enumerate the population abundance for both marked and unmarked individuals. The estimation of only marked individuals can be achieved through the batchMarkOptim() function. Similarly, the combined marked and unmarked can be achieved through the batchMarkUnmarkOptim() function. The algorithm was also implemented for the hidden Markov model encapsulated in batchMarkUnmarkOptim() to estimate the abundance of both marked and unmarked individuals in the population. The package is based on the paper: "Hidden Markov Models for Extended Batch Data" of Cowen et al. (2017) <doi:10.1111/biom.12701>.
License: AGPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
LinkingTo: Rcpp, RcppArmadillo
Imports: doParallel, foreach, optimbase, Rcpp, parallel
Depends: R (>= 4.0)
LazyData: true
Suggests: testthat (>= 3.0.0), knitr
Config/testthat/edition: 3
URL: https://github.com/Olobatuyi/extBatchMarking_cov
BugReports: https://github.com/Olobatuyi/extBatchMarking_cov/issues
NeedsCompilation: yes
Packaged: 2024-10-04 23:07:18 UTC; olobatuyikenny
Author: Kehinde Olobatuyi [aut, cre] (<https://orcid.org/0000-0002-4635-7895>),
  Simon Johns [aut],
  Matthew RP Parker [aut] (<https://orcid.org/0000-0003-3021-7959>),
  Steve Hof [aut],
  Laura LE Cowen [aut] (<https://orcid.org/0000-0002-0853-1450>)
Repository: CRAN
Date/Publication: 2024-10-04 23:40:02 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 03:32:45 UTC; unix
Archs: extBatchMarking.so.dSYM
