R: Calculation of Evolvability Parameters

# Calculation of Evolvability Parameters

## Documentation for package ‘evolvability’ version 2.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

evolvability-package | Calculation of Evolvability Parameters
Almer | Linear mixed model with correlated random effects structure
Almer_boot | Parametric bootstrap on 'Almer' model fit
Almer_SE | Linear mixed model for response variables with uncertainty
Almer_sim | Simulate responses from 'Almer' fit
conditionalG | Computing a conditional sub-matrix of G
evolvability | Calculation of Evolvability Parameters
evolvabilityBeta | Calculate evolvability parameters along a set of selection gradients
evolvabilityBetaMCMC | Calculate posterior distribution of evolvability parameters from a set of selection gradients
evolvabilityBetaMCMC2 | Calculate posterior distribution of evolvability parameters from a selection gradient estimated with uncertainty
evolvabilityMeans | Calculate average evolvability parameters of a G-matrix
evolvabilityMeansMCMC | Calculate posterior distribution of average evolvability parameters of a G-matrix
GLS | Generalized least square
macro_pred | Macroevolutionary predictions
meanStdG | Mean standardize a variance matrix
meanStdGMCMC | Mean standardize the posterior distribution of a G-matrix
phylH | Phylogenetic heritability
plot.rate_gls | Plot of rate_gls object
plot.simulate_rate | Plot of simulate_rate object
randomBeta | Generating selection gradients/vectors in random directions.
rate_gls | Generalized least squares rate model
rate_gls_boot | Bootstrap of the 'rate_gls' model fit
rate_gls_sim | Simulate responses from 'rate_gls' fit
responsediffBeta | Calculate response differences along a set of selection gradients
round_and_format | Rounds and formats in the same function
simulate_rate | Simulating evolutionary rate model
summary.evolvabilityBeta | Summarizing evolvability parameters over a set of selection gradients
summary.evolvabilityBetaMCMC | Summarizing posterior distribution of evolvability parameters over a set of selection gradients
summary.responsediffBeta | Summarizing response differences over a set of selection gradients