Package: epizootic
Title: Spatially Explicit Population Models of Disease Transmission in
        Wildlife
Version: 2.0.0
Authors@R: c(
    person("July", "Pilowsky", email = "pilowskyj@caryinstitute.org", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "https://orcid.org/0000-0002-6376-2585")),
    person("National Science Foundation Biology Integration Institute 2213854", 
           role = "fnd")
    )
Description: This extension of the pattern-oriented modeling framework of the 
    'poems' package provides a collection of modules and functions customized 
    for modeling disease transmission on a population scale in a spatiotemporally 
    explicit manner. This includes seasonal time steps, dispersal functions that 
    track disease state of dispersers, results objects that store disease states, 
    and a population simulator that includes disease dynamics.
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/viralemergence/epizootic
BugReports: https://github.com/viralemergence/epizootic/issues
Depends: R (>= 4.3.0)
Imports: purrr (>= 1.0.0), dplyr (>= 1.1.3), tibble (>= 3.2.1), R6 (>=
        2.5.1), cli (>= 3.6.1), raster (>= 3.6), qs2, poems (>= 1.1.0),
        doParallel (>= 1.0.16), foreach (>= 1.5.1), Rcpp
Suggests: testthat (>= 3.0.0), geosphere (>= 1.5), knitr (>= 1.17),
        rmarkdown (>= 1.6)
Config/testthat/edition: 3
Collate: 'DiseaseModel.R' 'RcppExports.R' 'SimulationHandler.R'
        'aspatial_siri_seasons.R' 'check_aspatial_siri_inputs.R'
        'check_simulator_inputs.R' 'data.R' 'disease_dispersal.R'
        'disease_results.R' 'disease_simulator.R'
        'disease_transformation.R' 'disease_transitions.R'
        'epizootic-package.R'
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: yes
Packaged: 2025-11-12 19:38:58 UTC; julypilowsky
Author: July Pilowsky [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6376-2585>),
  National Science Foundation Biology Integration Institute 2213854 [fnd]
Maintainer: July Pilowsky <pilowskyj@caryinstitute.org>
Repository: CRAN
Date/Publication: 2025-11-12 20:10:08 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 18:01:12 UTC; unix
Archs: epizootic.so.dSYM
