R: Epidemiological Data Display Package

# Epidemiological Data Display Package

## Documentation for package ‘epiDisplay’ version 3.7.0.0

- DESCRIPTION file
- Code demos. Use demo() to run them.

## Help Pages

A B C D E F G H I K L M N O P R S T V X Y misc

## -- A --

aggregate.numeric | Summary statistics of a numeric variable by group
aggregate.plot | Plot summary statistics of a numeric variable by group
alpha | Cronbach's alpha
alphaBest | Cronbach's alpha
ANCdata | Dataset on effect of new antenatal care method on mortality
ANCtable | Dataset on effect of new ANC method on mortality (as a table)
Attitudes | Dataset from an attitude survey among hospital staff

## -- B --

Bang | Dataset from 1988 Bangladesh Fertility Survey
BP | Dataset on blood pressure and determinants
by | Set column name

## -- C --

cc | Odds ratio calculation and graphing
cci | Odds ratio calculation and graphing
ci | Confidence interval of probabilty, mean and incidence
ci.binomial | Confidence interval of probabilty, mean and incidence
ci.default | Confidence interval of probabilty, mean and incidence
ci.numeric | Confidence interval of probabilty, mean and incidence
ci.poisson | Confidence interval of probabilty, mean and incidence
clogistic.display | Tables for multivariate odds ratio, incidence density etc
codebook | Codebook of a data frame
Compaq | Dataset on cancer survival
cox.display | Tables for multivariate odds ratio, incidence density etc
cs | Odds ratio calculation and graphing
csi | Odds ratio calculation and graphing
cum.percent | Set global variable for column name.

## -- D --

Decay | Dataset on tooth decay and mutan streptococci
des | Desription of a data frame or a variable
DHF99 | Dataset for exercise on predictors for mosquito larva infestation
distribution.of | Set global variable for column name.
dotplot | Dot plot

## -- E --

Ectopic | Dataset of a case-control study looking at history of abortion as a risk factor for ectopic pregnancy

## -- F --

Familydata | Dataset of a hypothetical family
followup.plot | Longitudinal followup plot
frequency | Set global variable for column name.
frequency1 | Set global variable for column name in codebook function.

## -- G --

graph.casecontrol | Odds ratio calculation and graphing
graph.prospective | Odds ratio calculation and graphing

## -- H --

Hakimi | Dataset on effect of training personnel on neonatal mortality
HW93 | Dataset from a study on hookworm prevalence and intensity in 1993

## -- I --

idr.display | Tables for multivariate odds ratio, incidence density etc
IudAdmit | Dataset admission of cases for IUD trials
IudDiscontinue | Dataset on discontinuation of the IUD trial cases
IudFollowup | Dataset followup cases of IUD trials

## -- K --

kap | Kappa statistic
kap.2.raters | Kappa statistic
kap.ByCategory | Kappa statistic
kap.default | Kappa statistic
kap.m.raters | Kappa statistic
kap.table | Kappa statistic

## -- L --

labelTable | Odds ratio calculation and graphing
locale | Set global variable for column name in graph.
logistic.display | Tables for multivariate odds ratio, incidence density etc
lookup | Recode several values of a variable
lroc | ROC curve
lrtest | Likelihood ratio test
lsNoFunction | List non-function objects

## -- M --

make2x2 | Odds ratio calculation and graphing
Marryage | Dataset on age at marriage
matchTab | Matched tabulation
max | Set global variable for column name in summ function.
mean | Set global variable for column name in summ function.
median | Set global variable for column name in summ function.
mhor | Mantel-Haenszel odds ratio
min | Set global variable for column name in summ function.
mlogit.display | Tables for multivariate odds ratio, incidence density etc
Montana | Dataset on arsenic exposure and respiratory deaths

## -- N --

n.for.2means | Sample size calculation
n.for.2p | Sample size calculation
n.for.cluster.2means | Sample size calculation
n.for.cluster.2p | Sample size calculation
n.for.equi.2p | Sample size calculation
n.for.lqas | Sample size calculation
n.for.noninferior.2p | Sample size calculation
n.for.survey | Sample size calculation
No.of.observations | Set column name

## -- O --

obs | Set global variable for column name in summ function.
ordinal.or.display | Tables for multivariate odds ratio, incidence density etc
Oswego | Dataset from an outbreak of food poisoning in US
Outbreak | Dataset from an outbreak of food poisoning on a sportsday, Thailand 1990.

## -- P --

percent | Set global variable for column name in graph.
Planning | Dataset for practicing cleaning, labelling and recoding
poisgof | Goodness of fit test for modeling of count data
power.for.2means | Power calculation for two sample means and proportions
power.for.2p | Power calculation for two sample means and proportions
print.alpha | Print alpha object
print.cci | Print cci results
print.des | Print 'des' results
print.display | Tables for multivariate odds ratio, incidence density etc
print.kap.ByCategory | Print kap.ByCategory results
print.kap.table | Print kap.table results
print.lrtest | Print lrtest results
print.matchTab | Print matched tabulation results
print.n.for.2means | Print n.for.2means results
print.n.for.2p | Print n.for.2p results
print.n.for.cluster.2means | Print n.for.cluster.2means results
print.n.for.cluster.2p | Print n.for.cluster.2p results
print.n.for.equi.2p | Print n.for.equi.2p results
print.n.for.lqas | Print n.for.lqas results
print.n.for.noninferior.2p | Print n.for.noninferior.2p results
print.n.for.survey | Print n.for.survey results
print.power.for.2means | Print power.for.2means results
print.power.for.2p | Print power.for.2p results
print.statStack | Print statStack object
print.summ.data.frame | Print summary of the data frame
print.summ.default | Print summary of a variable
print.tab1 | One-way tabulation
print.tableStack | Print tableStack object
pyramid | Population pyramid

## -- R --

regress.display | Tables for multivariate odds ratio, incidence density etc
roc.from.table | ROC curve

## -- S --

sd | Set global variable for column name in summ function.
setTitle | Setting the displayed language of Epicalc graph title
shapiro.qqnorm | Qqnorm plots with Shapiro-Wilk's test
Sleep3 | Dataset on sleepiness in a workshop
SO2 | Dataset on air pollution and deaths in UK
statStack | Statistics of a continuous variable stratified by factors
summ | Summary with graph
summ.data.frame | Summary with graph
summ.default | Summary with graph
summ.factor | Summary with graph
summ.logical | Summary with graph
Suwit | Hookworm infection and blood loss: SEAJTM 1970

## -- T --

tab1 | One-way tabulation
tableGlm | Tables for multivariate odds ratio, incidence density etc
tableStack | Tabulation of variables in a stack form
tabpct | Two-way tabulation with mosaic plot
Timing | Dataset on time going to bed, waking up and arrival at a workshop
titleString | Replace commonly used words in Epicalc graph title

## -- V --

var.name | Set global variable for column name in function.
VC1to1 | Datasets on a matched case-control study of esophageal cancer
VC1to6 | Datasets on a matched case-control study of esophageal cancer
VCT | Dataset on attitudes toward VCT

## -- X --

Xerop | Dataset from an Indonesian study on vitamin A deficiency and risk of respiratory infection

## -- Y --

ylab.for.summ | Set global variable for y-axis labels.

## -- misc --

.by | Set column name
.cum.percent | Set global variable for column name.
.distribution.of | Set global variable for column name.
.frequency | Set global variable for column name.
.frequency1 | Set global variable for column name in codebook function.
.locale | Set global variable for column name in graph.
.max | Set global variable for column name in summ function.
.mean | Set global variable for column name in summ function.
.median | Set global variable for column name in summ function.
.min | Set global variable for column name in summ function.
.No.of.observations | Set column name
.obs | Set global variable for column name in summ function.
.percent | Set global variable for column name in graph.
.sd | Set global variable for column name in summ function.
.var.name | Set global variable for column name in function.
.ylab.for.summ | Set global variable for y-axis labels.