as.eicm                 Define a parameterized EICM model
coef.eicm               Extract EICM model coefficients
coefficientComparisonPlot
                        Diagnostic monitor plots for EICM
confint.eicm            Confidence intervals for EICM parameters
eicm                    Fit and select an Explicit Interaction
                        Community Model (EICM)
eicm-package            eicm: Explicit Interaction Community Models
eicm.data               Define a data object for a EICM model
eicm.fit                Estimate a EICM model
eicm.matrix             Define a model object for a EICM model
eicm.options            Set EICM fitting options
generateEICM            Generate EICM model following a Beta frequency
                        distribution
interactionPlot         Compare two interaction matrices
isCyclic                Is the adjacency matrix a cyclic graph?
logLik.eicm             EICM (penalized) log-likelihood
plot.confint.eicm       Plot EICM estimates and confidence intervals
plot.eicm               Quick plot EICM results
plot.eicm.list          Quick plot EICM results
plot.profile.eicm       Plot EICM likelihood profile
plotNetworkFromMatrix   Plot graphs from adjacency matrices
predict.eicm            Predict method for EICM fits
print.eicm.matrix       Print EICM model matrix
profile.eicm            Likelihood profiles for EICMs
truemodel               A parameterized EICM model for simulation
