R: Calibration Assistant and Post-Processing Tool for Aquatic Ecosystem Model DYRESM-CAEDYM

# Calibration Assistant and Post-Processing Tool for Aquatic Ecosystem Model DYRESM-CAEDYM

## Documentation for package ‘dycdtools’ version 0.4.4

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

calib_assist | Assist calibration of DYRESM-CAEDYM model.
change_input_file | Change parameter value of input files to DYRESM_CAEDYM model.
delete_space | Delete all whitespace until a non-whitespace character.
ext_output | Extract outputs from a DYRESM-CAEDYM model run
hgt_to_dpt | convert from height to depth
interpol | Interpolation of DYRESM-CAEDYM simulation results across a series of user-defined depths.
objective_fun | Calculate statistical measures of goodness of fit for DYRESM-CAEDYM model simulations.
obs_temp | Example observed profiling temperature data across different depths over the period of 6-11 June 2017.
output_name | Default DYCD simulation variable names with their variable name
plot_cont | Contour plot of only simulation results of a water quality variable.
plot_cont_comp | Contour plot of DYRESM-CAEDYM simulation outputs of a water quality variable, with observed data shown as dots in the generated contour plot.
plot_prof | A post-processing function used to visualise model output in a profile graph.
plot_scatter | Scatter plot of the simulation and observation of a water quality variable. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.
plot_ts | Time series plot of simulated and observed values at target depths. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.
run_iteration | Internal function to provide parallel processing support to the calibration assistant function.