R: Digital PCR Analysis

# Digital PCR Analysis

## Documentation for package ‘dpcR’ version 0.6

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

dpcR-package | Digital PCR Analysis
adpcr | Class '"adpcr"' - end-point array digital PCR experiments
adpcr-class | Class '"adpcr"' - end-point array digital PCR experiments
adpcr2panel | Convert adpcr object to array
adpcr2ppp | Convert adpcr to ppp
binarize | Binarize digital PCR data
bind_dpcr | Bind dpcr objects
bind_dpcr,adpcr | Bind dpcr objects
bind_dpcr,dpcr | Bind dpcr objects
bind_dpcr,list | Bind dpcr objects
bind_dpcr-method | Bind dpcr objects
bind_dpcr-methods | Bind dpcr objects
bioamp | Analyze and plot a Bio-Rad droplet digital PCR experiment
BioradCNV | Copy number variation experiment
calc_coordinates | Calculate Array Coordinates
coef-method | Class '"count_test"'
compare_dens | Plot and Compare Densities
count_test | Class '"count_test"'
count_test-class | Class '"count_test"'
create_dpcr | Create dpcR object
ddpcRquant | Quantify droplets
df2dpcr | Convert data.frame to dpcr object
dpcR | Digital PCR Analysis
dpcr | Class '"dpcr"' - general digital PCR
dpcr-class | Class '"dpcr"' - general digital PCR
dpcr2df | Convert dpcr object to data frame
dpcr2df-method | Convert dpcr object to data frame
dpcr2df-methods | Convert dpcr object to data frame
dpcReport | Digital PCR Report Graphical User Interface
dPCRmethyl | Methylated human gDNA
dpcr_density | Calculate Density of Single dPCR Run
dpcr_density_gui | Digital PCR Density Graphical User Interface
dpcr_density_table | Calculate Density of Multiple dPCR runs
extract_dpcr | Extract Assays or Experiments
extract_run | Extract Digital PCR Run
limit_cq | Limit Cy0 values
many_peaks | Artificial data set with many peaks
moments | Calculate Moments of Poisson Distribution
moments-method | Calculate Moments of Poisson Distribution
moments-methods | Calculate Moments of Poisson Distribution
num2int | Convert numeric to integer
pds | Plasmid dilution series results
pds_raw | Plasmid dilution series raw data
plot-method | Class '"count_test"'
plot-method | Plot 'qdpcr' objects
plot.count_test | Class '"count_test"'
plot.qdpcr | Plot 'qdpcr' objects
plot_panel | Plot Panel
plot_vic_fam | Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
qdpcr | Class '"qdpcr"'
qdpcr-class | Class '"qdpcr"'
qpcr2pp | qPCR to Poisson Process
qpcr_analyser | qPCR Analyser
qpcr_analyser-method | qPCR Analyser
qpcr_analyser-methods | qPCR Analyser
read_amp | Read digital PCR amplitude raw data
read_BioMark | Read BioMark
read_dpcr | Read digital PCR data
read_QX100 | Read QX100
read_QX200 | Read QX200
read_redf | Read digital PCR raw data
rename_dpcr | Rename object
rtadpcr | Class '"rtadpcr"' - real-time array digital PCR experiments
rtadpcr-class | Class '"rtadpcr"' - real-time array digital PCR experiments
show | Methods for Function 'show'
show-method | Class '"count_test"'
show-method | Class '"qdpcr"'
show-method | Methods for Function 'show'
show-methods | Methods for Function 'show'
show.qdpcr | Class '"qdpcr"'
sim_adpcr | Simulate Array Digital PCR
sim_dpcr | Simulate Droplet Digital PCR
six_panels | Simulated Digital PCR data
summary | Methods for Function 'summary'
summary-method | Class '"count_test"'
summary-method | Class '"qdpcr"'
summary-method | Methods for Function 'summary'
summary-methods | Methods for Function 'summary'
summary.adpcr | Methods for Function 'summary'
summary.dpcr | Methods for Function 'summary'
summary.qdpcr | Class '"qdpcr"'
test_counts | Test counts
test_counts_gui | Compare digital PCR runs - interactive presentation
test_panel | Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
test_peaks | Peak Test
test_peaks-method | Peak Test
test_peaks-methods | Peak Test
test_pooled | Compare pooled digital PCR
White | Digitalized Data from a Fluidigm Array