BeckLee                 Beck and Lee 2014 datasets
BeckLee_disparity       BeckLee_disparity
Claddis.ordination      Imports data from Claddis
MCMCglmm.subsets        MCMCglmm.subsets
MCMCglmm.utilities      MCMCglmm object utility functions
add.tree                Add, remove or get trees (or subtrees)
adonis.dispRity         adonis dispRity (from 'vegan::adonis2')
apply.NA                Apply inapplicable characters to a matrix.
as.covar                as.covar
bhatt.coeff             Bhattacharyya Coefficient
boot.matrix             Bootstraps and rarefies data.
char.diff               Character differences
charadriiformes         Charadriiformes
check.morpho            Check a morphological matrix consistency
                        levels.
chrono.subsets          Separating data in chronological subsets.
clean.data              Cleaning phylogenetic data
covar.plot              covar.plot
covar.utilities         Utilities for a dispRity object with covariance
                        matrices
crown.stem              Separates stem and crown species
custom.subsets          Separating data into custom subsets.
demo_data               Demo datasets
dispRity                Calculates disparity from a matrix.
dispRity-package        Measuring Disparity in R
dispRity.covar.projections
                        Covar projection analyses wrapper
dispRity.fast           Fast dispRity
dispRity.metric         Disparity metrics
dispRity.per.group      Disparity in different groups.
dispRity.through.time   Disparity through time.
disparity               disparity
distance.randtest       Randtest distance
dtt.dispRity            dtt dispRity (from 'geiger::dtt')
extinction.subsets      Getting the time subsets before and after an
                        extinction event
geomorph.ordination     Imports data from geomorph
get.bin.ages            Get time bins ages
get.contrast.matrix     Generates a contrast matrix.
get.matrix              Extract elements from a 'dispRity' object.
get.subsets             Extracts or modify subsets from a 'dispRity'
                        object.
make.dispRity           Make and fill 'dispRity'.
make.metric             Creating disparity metrics
match.tip.edge          Match tips or nodes edge vector
model.test              Model Test
model.test.sim          Simulate Model Test
model.test.wrapper      Model test wrapper
multi.ace               Ancestral states estimations with multiple
                        trees
null.test               Testing a null hypothesis on multidimensional
                        data.
pair.plot               Plots pairwise comparisons
pgls.dispRity           phylolm dispRity (from 'phylolm::phylolm')
plot.char.diff          Plots character differences
plot.dispRity           dispRity object plotting
print.dispRity          Prints a 'dispRity' object.
random.circle           Random circle
randtest.dispRity       Random (permutation) test
reduce.matrix           Reduce a matrix
reduce.space            Reduce space
remove.zero.brlen       Remove zero branch length
scale.dispRity          Rescaling and centering disparity results.
select.axes             Selects ordination axes
set.root.time           Adds root time to a tree
sim.morpho              Simulates morphological data.
slice.tree              Time slicing a tree.
slide.nodes             Stretching a tree
sort.dispRity           Sorting or ordering a 'dispRity' object.
space.maker             Creating multidimensional spaces
summary.dispRity        dispRity object summary
test.dispRity           Testing disparity hypotheses
test.metric             Test disparity metric
tree.age                Extracting the age of nodes and tips in a tree.
