R: A Tool for Processing and Analyzing Dendrometer Data

# A Tool for Processing and Analyzing Dendrometer Data

## Documentation for package ‘dendRoAnalyst’ version 0.1.6

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

clim.twd | Calculate relative dendrometer change during adverse climate periods and the following normal phase
clim.twd.stats | Calculate tree-, species-, or site-level statistics from clim.twd output
clim.twd.test | Statistical testing for clim.twd output
daily.data | Daily statistics of dendrometer data
dendro.resample | Resampling temporal resolution of dendrometer and climate data
dendro.truncate | Truncation of dendrometer data
dm.detrend.fit | Detrend and standardize dendrometer series from growth-fit residuals
dm.fit.gompertz | Fitting gompertz function on annual dendrometer data
dm.growth.evaluate | Compare dendrometer growth-fitting methods using fit statistics
dm.growth.fit | Fit dendrometer growth curves by vegetation season
dm.growth.fit.double | Fit bimodal dendrometer growth curves by vegetation season
dm.na.interpolation | Detection and interpolation of missing values in dendrometer data
dm_add_climate | Add climate information to dendrometer outputs
dm_daily_clim | Daily climate summaries for dendrometer analyses
dm_epoch_extract | Build an epoch table around event times
dm_epoch_test | Test superposed epoch composites against a null distribution
dm_event_climate | Extract climate at and before phase events
dm_event_climate_summary | Summarize event-based climate results
dm_event_climate_test | Test differences in event-based climate between groups
dm_event_times | Extract event times from phase.zg() or phase.sc() output
dm_join_daily_clim | Join daily climate summaries to daily dendrometer statistics
dm_join_phase_clim | Join climate summaries to dendrometer phase windows
dm_join_subdaily_clim | Join subdaily climate features to point-level dendrometer output
dm_plot_climate | Plot climate attached to dendrometer outputs
dm_plot_climate_compare | Compare multiple climate variables attached to dendrometer outputs
dm_standardize | Standardize dendrometer series within seasonal years
dm_subdaily_clim | Subdaily climate features for dendrometer analyses
dm_wavelet | Wavelet analysis of dendrometer series
dm_wavelet_coherence | Wavelet coherence between dendrometer and climate series
dm_wavelet_reconstruct | Reconstruct or remove selected cycle components from a dm_wavelet object
gf_nepa17 | Dendrometer data of Kathmandu for 2017 with gap filled
i.jump.locator | Removing artefacts due to manual adjustments of dendrometers interactively
jump.locator | Removing artefacts due to manual adjustments of dendrometers automatically for more than one dendrometer
ktm_clim_hourly | Hourly climate data for Kathmandu derived from ERA5-Land
ktm_rain17 | Daily rainfall data of Kathmandu for 2017.
mean_detrended.dm | Calculate the mean detrended dendrometer series
mov.cor.dm | Running correlation between dendrometer data and climate
nepa | Dendrometer data from Kathmandu
nepa17 | Dendrometer data of Kathmandu for 2017
nepa2 | Dendrometer data from Kathmandu version 2
network.interpolation | Interpolate missing dendrometer values using a site network
phase.sc | Application of the stem-cycle approach to classify dendrometer phases
phase.zg | Apply the Zero-Growth (ZG) approach to segment dendrometer data into TWD/GRO phases
plot.clim_twd_stats | Plot method for clim.twd.stats output
plot.clim_twd_test | Plot method for clim.twd.test output
plot.daily_output | Plot method for daily dendrometer statistics
plot.daily_output_clim | Plot climate-augmented daily dendrometer output
plot.dm_detrended | Plot detrended dendrometer series
plot.dm_epoch | Plot a dm_epoch object
plot.dm_growth_evaluation | Plot growth-fitting evaluation statistics
plot.dm_growth_fit | Plot dendrometer growth-fit results
plot.dm_na_interpolation | Plot method for dendrometer NA interpolation results
plot.dm_standardized | Plot method for standardized dendrometer output
plot.dm_wavelet | Plot method for wavelet analysis output
plot.dm_wavelet_coherence | Plot method for dm_wavelet_coherence objects
plot.dm_wavelet_reconstruct | Plot method for dm_wavelet_reconstruct objects
plot.mean_dm_detrended | Plot mean detrended dendrometer series
plot.mov_cor_dm | Plot method for moving dendrometer-climate correlation
plot.network_interpolation | Plot method for network interpolation output
plot.SC_output | Plot method for stem-cycle output
plot.SC_output_clim | Plot climate-augmented stem-cycle output
plot.summary_mov_cor_dm | Plot method for summaries of moving dendrometer-climate correlation
plot.ZG_output | Plot method for zero-growth output
plot.ZG_output_clim | Plot climate-augmented zero-growth output
plot_dm_assessment | Plot interpolation assessment metrics
plot_dm_gaps | Plot detected gaps in dendrometer data
plot_dm_interpolation | Plot original and interpolated dendrometer series
plot_event_climate_box | Plot event-based climate distributions
plot_event_climate_relation | Plot event-based climate-response relationships
plot_mov.cor | Backward-compatible wrapper for plotting moving correlation
print.dm_growth_fit | Print a dm_growth_fit object
print.mov_cor_dm | Print method for running dendrometer-climate correlation objects
print.summary.clim_twd_stats | Print summary of clim.twd.stats output
print.summary.clim_twd_test | Print summary of clim.twd.test output
print.summary.dm_epoch | Print summary of a dm_epoch object
print.summary.dm_growth_fit | Print a summary.dm_growth_fit object
print.summary.dm_wavelet_reconstruct | Print method for summary.dm_wavelet_reconstruct
print.summary_mov_cor_dm | Print method for summaries of running dendrometer-climate correlation objects
read.climate | Read and standardize climate data for dendrometer analyses
read.dendrometer | Reading dendrometer data
reso_dm | Detect Temporal Resolution and Irregularities in Time Series
smooth_dm | Smoothing of Dendrometer Time Series
summary.clim_twd_stats | Summarize clim.twd.stats output
summary.clim_twd_test | Summarize clim.twd.test output
summary.dm_epoch | Summarize a dm_epoch object
summary.dm_growth_fit | Summarize a dm_growth_fit object
summary.dm_wavelet | Summarize a dm_wavelet object
summary.dm_wavelet_reconstruct | Summarize a dm_wavelet_reconstruct object
summary.mov_cor_dm | Summary method for running dendrometer-climate correlation objects
twd.maxima | Locating the maxima of TWD periods