DataObject-class        DataObject wraps raw data with system-level
                        metadata
DataPackage-class       A class representing a data package
ResourceMap-class       ResourceMap provides methods to create,
                        serialize and deserialize an OAI ORE resource
                        map
SystemMetadata          Create DataONE SystemMetadata object
SystemMetadata-class    A DataONE SystemMetadata object containing
                        basic identification, ownership, access policy,
                        replication policy, and related metadata
addAccessRule           Add access rules to the specified object
addData                 Add a DataObject to the DataPackage
addMember               Add a DataObject to the DataPackage
calculateChecksum       Calculate a checksum for the DataObject using
                        the specified checksum algorithm
canRead                 Test whether the provided subject can read an
                        object
clearAccessPolicy       Clear the accessPolicy from the specified
                        object
containsId              Returns true if the specified object is a
                        member of the package
createFromTriples       Populate a ResourceMap with RDF relationships
                        from data.frame
describeWorkflow        Add data derivation information to a
                        DataPackage
dmsg                    Print a debugging message to stderr
freeResourceMap         Free memory used by a ResouceMap
getData                 Get the data content of a specified data object
getFormatId             Get the FormatId of the DataObject
getIdentifier           Get the Identifier of the DataObject
getIdentifiers          Get the Identifiers of Package Members
getMember               Return the Package Member by Identifier
getRelationships        Retrieve relationships of package objects
getSize                 Get the Count of Objects in the Package
getTriples              Get the RDF relationships stored in the
                        ResourceMap
getValue                Get values for selected DataPackage members
hasAccessRule           Determine if an access rules exists
initialize,DataObject-method
                        Initialize a DataObject
initialize,DataPackage-method
                        Initialize a DataPackage object
initialize,ResourceMap-method
                        Initialize a ResourceMap object
initialize,SystemMetadata-method
                        Initialize a DataONE SystemMetadata object with
                        default values or values passed in to the
                        constructor
insertRelationship      Record relationships of objects in a
                        DataPackage
parseRDF                Parse an RDF/XML resource map from a file
parseSystemMetadata     Parse an external XML document and populate a
                        SystemMetadata object with the parsed data
plotRelationships       Plot derivation relationships obtained from
                        getRelationships
recordDerivation        Record derivation relationships between objects
                        in a DataPackage
removeAccessRule        Remove an access rule from the specified object
removeMember            Remove the Specified Member from the Package
removeRelationships     Remove relationships of objects in a
                        DataPackage
replaceMember           Replace the raw data or file associated with a
                        DataObject
selectMember            Return identifiers for objects that match
                        search criteria
serializePackage        Create an OAI-ORE resource map from the package
serializeRDF            Serialize a ResouceMap
serializeSystemMetadata
                        Serialize a SystemMetadata object to an XML
                        representation
serializeToBagIt        Serialize A DataPackage into a BagIt Archive
                        File
setPublicAccess         Add a Rule to the AccessPolicy to make the
                        object publicly readable
setValue                Set values for selected DataPackage members
updateMetadata          Update selected elements of the XML content of
                        a DataObject in a DataPackage (aka package
                        member)
updateRelationships     Update package relationships by replacing an
                        old identifier with a new one
updateXML               Update selected elements of the XML content of
                        a DataObject
validate                Validate a SystemMetadata object
