addGraphFromDataFrame   Add graph from data.frame
addGraphFromJsonFile    Add graph from JSON file
clearSelection          Clear selection all node and edge selections
                        removed
cyjShiny                cyjShiny cyjShiny
cyjShinyOutput          Standard shiny ui rendering construct
dataFramesToJSON        Create a cytoscape.js JSON graph from one or
                        two data.frames.
doLayout                Layout the current graph using the specified
                        strategy.
fit                     Set zoom and center of the graph display so
                        that graph fills the display.
fitSelected             Set zoom and center of the graph display so
                        that the currently selected nodes fill the
                        display
getNodePositions        Get node positions
getSelectedNodes        Get Selected Nodes
graphNELtoJSON          Convert R graphNEL object to cytoscape.js JSON.
hideSelection           Hide selection all selected nodes and their
                        edges are hidden
invertSelection         Invert selection all selected nodes and their
                        edges are hidden
loadNetworkFromJSONFile
                        Load a standard cytoscape.js JSON network file
loadStyleFile           Load a standard cytoscape.js style file
readAndStandardizeJSONNetworkFile
                        Read in a JSON network file, identify (or add)
                        elements field return JSON
readAndStandardizeJSONStyleFile
                        Read in a JSON file, extract the selector
                        elements, return JSON
removeGraph             Remove the current graph
renderCyjShiny          More shiny plumbing - a cyjShiny wrapper for
                        htmlwidget standard rendering operation
savePNGtoFile           Save a png rendering of the current network
                        view to the specified filename
selectFirstNeighbors    Select first neighbors of the currently
                        selected nodes
selectNodes             Select Nodes
setEdgeAttributes       Assign the supplied edge attribute values to
                        the graph structure contained in the browser.
setNodeAttributes       Assign the supplied node attribute values to
                        the graph structure contained in the browser.
setNodePositions        Set node positions from the supplied data.frame
showAll                 Show all all selected nodes and their edges are
                        hidden
