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Adjusted_inv_sinh_CI_OR_2x2
                        The adjusted inverse hyperbolic sine confidence
                        interval for the odds ratio
Adjusted_inv_sinh_CI_ratio_2x2
                        The adjusted inverse hyperbolic sine confidence
                        interval for the ratio of probabilities
Adjusted_log_CI_2x2     The adjusted log confidence interval for the
                        ratio of probabilities
AgrestiCaffo_CI_2x2     The Agresti-Caffo confidence interval for the
                        difference between probabilities
AgrestiCoull_CI_1x2     The Agresti-Coull confidence interval for the
                        binomial probability
Arcsine_CI_1x2          Arcsine confidence interval
BaptistaPike_exact_conditional_CI_2x2
                        The Baptista-Pike exact conditional confidence
                        interval for the odds ratio
BaptistaPike_midP_CI_2x2
                        The Baptista-Pike mid-P confidence interval for
                        the odds ratio
Bhapkar_test_paired_cxc
                        The Bhapkar test for marginal homogeneity
Blaker_exact_CI_1x2     The Blaker exact confidence interval
Blaker_exact_test_1x2   The Blaker exact test
Blaker_midP_CI_1x2      The Blaker mid-P confidence interval for the
                        binomial probability
Blaker_midP_test_1x2    The Blaker mid-P test
BonettPrice_hybrid_Wilson_score_CI_CC_paired_2x2
                        The Bonett-Price hybrid Wilson score confidence
                        interval for the ratio of paired probabilities
BonettPrice_hybrid_Wilson_score_CI_paired_2x2
                        The Bonett-Price hybrid Wilson score confidence
                        interval for the ratio of paired probabilities
Bonferroni_type_CIs_paired_cxc
                        Bonferroni-type confidence intervals for
                        differences of marginal probabilities
Bonferroni_type_CIs_rxc
                        The Bonferroni-type simultaneous confidence
                        intervals for the differences pi_1|i - pi_1|j
Brant_test_2xc          The Brant test for the proportional odds
                        assumption
BreslowDay_homogeneity_test_stratified_2x2
                        The Breslow-Day test of homogeneity of odds
                        ratios over strata
Chacko_test_1xc         The Chacko test for order-restriction
ClopperPearson_exact_CI_1x2
                        The Clopper-Pearson exact confidence interval
ClopperPearson_exact_CI_1x2_beta_version
                        The Clopper-Pearson exact confidence interval
                        for the binomial probability (beta version)
ClopperPearson_midP_CI_1x2
                        The Clopper-Pearson mid-P confidence interval
CochranArmitage_CI_rx2
                        The Cochran-Armitage confidence interval for
                        trend in the linear model
CochranArmitage_MH_tests_rx2
                        The Cochran-Armitage, modified
                        Cochran-Armitage, and Mantel-Haenszel tests for
                        trend
CochranArmitage_exact_cond_midP_tests_rx2
                        The Cochran-Armitage exact conditional and
                        mid-P tests
CochranMantelHaenszel_test_stratified_2x2
                        The Cochran-Mantel-Haenszel test of a common
                        odds ratio
Cochran_Q_test_stratified_2x2
                        The Cochran Q test of homogeneity of effects
                        over strata
Cornfield_exact_conditional_CI_2x2
                        The Cornfield exact conditional confidence
                        interval for the odds ratio
Cornfield_midP_CI_2x2   The Cornfield mid-P confidence interval for the
                        odds ratio
Cumulative_models_for_2xc
                        Cumulative logit and probit models
Cumulative_models_for_rxc
                        Cumulative logit and probit models
Exact_binomial_test_1x2
                        The exact binomial test for the binomial
                        probability (pi)
Exact_cond_midP_linear_rank_tests_2xc
                        Exact conditional and mid-P linear rank tests
Exact_cond_midP_tests_rxc
                        Exact conditional and mid-P tests for the rxc
                        table
Exact_cond_midP_unspecific_ordering_rx2
                        The exact conditional and mid-P tests for
                        unspecific ordering
Exact_multinomial_test_1xc
                        The exact multinomial test for multinomial
                        probabilities
Exact_unconditional_test_2x2
                        Exact unconditional test for association in 2x2
                        tables
FisherFreemanHalton_asymptotic_test_rxc
                        The Fisher-Freeman-Halton asymptotic test for
                        unordered rxc tables
Fisher_exact_test_2x2   The Fisher exact test for association in 2x2
                        tables
Fisher_midP_test_2x2    The Fisher mid-P test for association in 2x2
                        tables
FleissEveritt_test_paired_cxc
                        The Fleiss-Everitt version of the Stuart test
                        for marginal homogeneity
FleissLevinPaik_test_paired_cxc
                        The Fleiss-Levin-Paik test for three-level
                        ordinal outcomes
Gart_adjusted_logit_CI_2x2
                        The Gart adjusted logit confidence interval for
                        the odds ratio
Gold_Wald_CIs_1xc       The Gold Wald simultaneous intervals for the
                        multinomial probabilities
Goodman_Wald_CIs_1xc    The Goodman Wald simultaneous intervals for the
                        multinomial probabilities
Goodman_Wald_CIs_for_diffs_1xc
                        The Goodman Wald simultaneous intervals for the
                        differences between the
Goodman_Wilson_score_CIs_1xc
                        The Goodman Wilson score simultaneous intervals
                        for the multinomial probabilities
Independence_smoothed_logit_CI_2x2
                        The Independence-smoothed logit confidence
                        interval for the odds ratio
Inv_sinh_CI_OR_2x2      The inverse hyperbolic sine confidence interval
                        for the odds ratio
Inv_sinh_CI_ratio_2x2   The inverse hyperbolic sine confidence interval
                        for the ratio of probabilities
InverseVariance_estimate_stratified_2x2
                        The inverse variance estimate of the overall
                        effect across strata
Jeffreys_CI_1x2         Jeffreys confidence interval for the binomial
                        probability
JonckheereTerpstra_test_rxc
                        The Jonckheere-Terpstra test for association
Katz_log_CI_2x2         The Katz log confidence interval for the ratio
                        of probabilities
Kendalls_tau_b_rxc      Kendall's tau-b with confidence interval based
                        on the Fieller standard deviation
Kendalls_tau_b_rxc_bca
                        Kendall's tau-b with the bias-corrected and
                        accelerated boostrap confidence interval
Koopman_asymptotic_score_CI_2x2
                        The Koopman asymptotic score confidence
                        interval for the ratio of probabilities
KruskalWallis_asymptotic_test_rxc
                        The Kruskal-Wallis asymptotic test for singly
                        ordered rxc tables
LR_CI_1x2               The likelihood ratio confidence interval for
                        the binomial probability
LR_test_1x2             The likelihood ratio test for the binomial
                        probability (pi)
LR_test_1xc             The likelihood ratio test for multinomial
                        probabilities
LR_test_2x2             The likelihood ratio test for association in
                        2x2 tables
ML_estimates            Calculate ML estimates
ML_estimates_and_CIs_stratified_2x2
                        Maximum likelihood estimates with CIs of the
                        grouping and strata effects
MOVER_R_Wilson_CI_OR_2x2
                        The MOVER-R Wilson confidence interval for the
                        odds ratio
MOVER_R_Wilson_CI_ratio_2x2
                        The MOVER-R Wilson confidence interval for the
                        ratio of probabilities
MOVER_Wilson_score_CI_paired_2x2
                        The MOVER Wilson score confidence interval for
                        the ratio of paired probabilities
MantelHaenszel_estimate_stratified_2x2
                        The Mantel-Haenszel estimate of the overall
                        effect across strata
MantelHaenszel_test_2xc
                        The Mantel-Haenszel test of association with
                        column scores
McNemarBowker_test_paired_cxc
                        The McNemar-Bowker test for marginal symmetry
McNemar_asymptotic_test_CC_paired_2x2
                        The McNemar asymptotic test with continuity
                        correction
McNemar_asymptotic_test_paired_2x2
                        The McNemar asymptotic test
McNemar_exact_cond_test_paired_2x2
                        The McNemar exact conditional test
McNemar_exact_unconditional_test_paired_2x2
                        The McNemar exact unconditional test
McNemar_midP_test_paired_2x2
                        The McNemar mid-P test
Mee_asymptotic_score_CI_2x2
                        The Mee asymptotic score confidence interval
                        for the difference between probabilities
MidP_binomial_test_1x2
                        The mid-P binomial test for the binomial
                        probability (pi)
MidP_multinomial_test_1xc
                        The mid-P multinomial test for multinomial
                        probabilities
MiettinenNurminen_asymptotic_score_CI_OR_2x2
                        The Miettinen-Nurminen asymptotic score CI for
                        the odds ratio
MiettinenNurminen_asymptotic_score_CI_difference_2x2
                        The Miettinen-Nurminen asymptotic score
                        confidence interval for the
MiettinenNurminen_asymptotic_score_CI_ratio_2x2
                        The Miettinen-Nurminen asymptotic score
                        confidence interval for the ratio of
                        probabilities
Newcombe_hybrid_score_CI_2x2
                        The Newcombe hybrid score confidence interval
                        for the difference between probabilities
Newcombe_square_and_add_CI_paired_2x2
                        The Newcombe square-and-add confidence interval
                        for the difference
Pearson_LR_homogeneity_test_stratified_2x2
                        The Pearson chi-squared and likelihood ratio
                        tests for homogeneity over strata
Pearson_LR_test_common_effect_stratified_2x2
                        The Pearson chi-squared and likelihood ratio
                        tests of a common difference
Pearson_LR_tests_cum_OR_2xc
                        The Pearson chi-squared and likelihood ratio
                        tests for cumulative ORs in 2xc tables
Pearson_LR_tests_rxc    The Pearson chi-squared and likelihood ratio
                        tests for association in rxc tables
Pearson_LR_tests_unspecific_ordering_rx2
                        The Pearson chi-squared and likelihood ratio
                        tests for unspecific ordering in rx2 tables
Pearson_chi_squared_test_1xc
                        The Pearson chi-squared test for multinomial
                        probabilities
Pearson_chi_squared_test_2x2
                        The Pearson chi-squared test for association in
                        2x2 tables
Pearson_chi_squared_test_CC_2x2
                        The Pearson chi-squared test for association in
                        2x2 tables
Pearson_correlation_coefficient_rxc
                        The Pearson correlation coefficient
Pearson_correlation_coefficient_rxc_bca
                        The Pearson correlation coefficient with the
                        bias-corrected and accelerated
Pearson_residuals_rxc   The Pearson residuals and the standardized
                        Pearson residuals
Peto_OR_estimate_stratified_2x2
                        The Peto estimate of the common odds ratio
                        across strata
Peto_homogeneity_test_stratified_2x2
                        The Peto test for homogeneity of odds ratios
                        over strata
PriceBonett_approximate_Bayes_CI_2x2
                        The Price-Bonett approximate Bayes confidence
                        interval for the ratio of probabilities
QuesenberryHurst_Wilson_score_CIs_1xc
                        The Quesenberry-Hurst Wilson score simultaneous
                        intervals for the multinomial probabilities
RBG_test_and_CI_stratified_2x2
                        The RBG test and CI for a common odds ratio
Scheffe_type_CIs_paired_cxc
                        Scheffe-type confidence intervals for
                        differences of marginal probabilities
Scheffe_type_CIs_rxc    The Scheffe-type simultaneous confidence
                        intervals for the differences pi_1|i - pi_1|j
Score_test_1x2          The score test for the binomial probability
                        (pi)
Score_test_CC_1x2       The score test with continuity correction for
                        the
Score_test_and_CI_marginal_mean_scores_paired_cxc
                        Score test and CI marginal mean scores paired
                        CxC
Score_test_for_effect_in_the_probit_model_2xc
                        Score test for effect in the cumulative probit
                        model
Spearman_correlation_coefficient_rxc
                        The Spearman correlation coefficient
Spearman_correlation_coefficient_rxc_bca
                        The Spearman correlation coefficient with the
                        bias-corrected and accelerated
Stuart_test_paired_cxc
                        The Stuart test for marginal homogeneity
Tang_asymptotic_score_CI_paired_2x2
                        The Tang asymptotic score confidence interval
                        for the ratio of paired probabilities
Tango_asymptotic_score_CI_paired_2x2
                        The Tango asymptotic score confidence interval
                        for the difference between paired probabilities
Transformed_Blaker_exact_CI_paired_2x2
                        The Transformed Blaker exact confidence
                        interval for the conditional odds ratio
Transformed_Clopper_Pearson_exact_CI_paired_2x2
                        The Transformed Clopper-Pearson exact
                        confidence interval for the conditional odds
                        ratio
Transformed_Clopper_Pearson_midP_CI_paired_2x2
                        The Transformed Clopper-Pearson mid-P
                        confidence interval for the conditional odds
                        ratio
Transformed_Wilson_score_CI_paired_2x2
                        The Transformed Wilson score confidence
                        interval for the conditional odds ratio
Trend_estimate_CI_tests_rx2
                        Trend estimate for linear and logit models
Uncorrected_asymptotic_score_CI_2x2
                        The uncorrected asymptotic score confidence
                        interval for the odds ratio
Wald_CI_1x2             The Wald confidence interval for the binomial
                        probability
Wald_CI_2x2             The Wald confidence interval for the difference
                        between probabilities
Wald_CI_AgrestiMin_paired_2x2
                        The Wald confidence interval for the difference
                        between paired probabilities
Wald_CI_BonettPrice_paired_2x2
                        The Wald confidence interval for the difference
                        between paired probabilities
Wald_CI_CC_1x2          The Wald CI with CC for the binomial
                        probability
Wald_CI_CC_2x2          The Wald confidence interval for the difference
                        between probabilities
Wald_CI_OR_Laplace_paired_2x2
                        The Wald confidence interval for the
                        conditional odds ratio with Laplace adjustment
Wald_CI_OR_paired_2x2   The Wald confidence interval for the
                        conditional odds ratio
Wald_CI_diff_CC_paired_2x2
                        The Wald confidence interval for the difference
                        between paired probabilities
Wald_CI_diff_paired_2x2
                        The Wald confidence interval for the difference
                        between paired probabilities
Wald_CI_ratio_paired_2x2
                        The Wald confidence interval for the ratio of
                        paired probabilities
Wald_test_1x2           The Wald test for the binomial probability (pi)
Wald_test_CC_1x2        The Wald test with continuity correction for
                        the binomial probability
Wald_test_and_CI_common_diff_stratified_2x2
                        The Wald test and CI for a common difference
                        between probabilities
Wald_test_and_CI_common_ratio_stratified_2x2
                        The Wald test and CI for a common ratio of
                        probabilities
Wald_test_and_CI_marginal_mean_ranks_paired_cxc
                        The Wald test and confidence interval for the
                        difference between marginal mean ranks / ridits
Wald_test_and_CI_marginal_mean_scores_paired_cxc
                        The Wald test and confidence interval for the
                        difference between marginal mean scores
Wilson_score_CI_1x2     The Wilson score confidence interval
Wilson_score_CI_CC_1x2
                        The Wilson score confidence interval with
                        continuity correction for the binomial
                        probability
Woolf_logit_CI_2x2      The Woolf logit confidence interval for the
                        odds ratio
Woolf_test_and_CI_stratified_2x2
                        The Woolf test and CI for a common odds ratio
Z_unpooled_test_2x2     The Z-unpooled test for association in 2x2
                        tables
bentur_2009             Airway hyper-responsiveness before and after
                        stem cell transplantation
calc_Pvalue_4x2         Calculate probability
calc_Pvalue_5x2         Calculate probability
calc_prob               Calculate probability
calculate_limit_lower   Calculate the lower limit of a confidence
                        interval
calculate_limit_upper   Calculate the upper limit of a confidence
                        interval
cavo_2012               Complete response before and after
                        consolidation therapy
chap1                   Chapter 1: Introduction
chap10                  Chapter 10: Stratified 2x2 Tables and
                        Meta-Analysis
chap2                   Chapter 2: The 1x2 Table and the Binomial
                        Distribution
chap3                   Chapter 3: The 1xc Table and the Multinomial
                        Distribution
chap4                   Chapter 4: The 2x2 Table
chap5                   Chapter 5: The Ordered rx2 Table
chap6                   Chapter 6: The Ordered 2xc Table
chap7                   Chapter 7: The rxc Table
chap8                   Chapter 8: The Paired 2x2 Table
chap9                   Chapter 9: The Paired cxc Table
contingencytables       Statistical Analysis of Contingency tables
contingencytables_result
                        contingencytables_result class
doll_hill_1950          Smoking and lung cancer
ezra_2010               Floppy eyelid syndrome vs obstructive sleep
                        apnea
fischer_1999            A comparison between serial and retrospective
                        measurements
fleiss_2003             Table 13.6, page 382, of Fleiss et al. (2003)
fontanella_2008         The Adolescent Placement Study
gamma_coefficient_rxc   The gamma coefficient
gamma_coefficient_rxc_bca
                        The gamma coefficient with the bias-corrected
                        and accelerated boostrap confidence interval
hine_1989               Prophylactice use of Lidocaine in myocardial
                        infarction
hypothetical            Hypothetical experiment
indredavik_2008         Elevated troponin T levels in stroke patients
lampasona_2013          A case-control study of GADA exposure on IPEX
                        syndrome
ligarden_2010           Ligarden et al., 2010
linear_by_linear_test_rxc
                        The linear-by-linear test for association
list_functions          List functions from a chapter
lydersen_2012a          Postoperative nausea
mills_graubard_1987     Alcohol consumption and malformations
perondi_2004            An RCT of high vs standard dose of epinephrine
peterson_2007           Pretherapy susceptability of pathogens
print.contingencytables_result
                        Output from a contingency tables method
ritland_2007            The association between CHRNA4 genotype and XFS
score_test_statistic    Calculate ML estimates
singh_2010_1            The number of n-th order male births
snp6498169              Genotype counts for SNP rs 6498169 in RA
                        patients
stratified_2x2_tables   Stratified 2x2 tables
table_7.3               Treatment for ear infection
table_7.4               Psychiatric Diagnoses and Physical Activity
table_7.5               Psychiatric diag. vs BMI with hyperkinetic
                        disorders as reference category
table_7.6               Low Birth Weight vs psychiatric morbitidy with
                        control as reference category
table_7.7               Colorectal cancer (Table 7.7)
table_7.8               Breast Tumor
table_7.9               Self-rated health (Table 7.9)
tea                     A lady tasting a cup of tea
the_1x2_table_CIs       The 1x2 Table CIs
the_1x2_table_tests     The 1x2 Table tests
the_1xc_table_CIs       The 1xc table CIs
the_1xc_table_tests     The 1xc table tests
the_2x2_table_CIs_OR    The 2x2 table CIs odds ratio
the_2x2_table_CIs_difference
                        The 2x2 table CIs difference
the_2x2_table_CIs_ratio
                        The 2x2 table CIs ratio
the_2x2_table_tests     The 2x2 table tests
the_2xc_table           The 2xc table
the_paired_2x2_table_CIs_OR
                        The Paired 2x2 table CIs OR
the_paired_2x2_table_CIs_difference
                        The Paired 2x2 table CIs difference
the_paired_2x2_table_CIs_ratio
                        The Paired 2x2 table CIs ratio
the_paired_2x2_table_tests
                        The Paired 2x2 table tests
the_paired_cxc_table_nominal
                        The Paired CxC table - nominal
the_paired_cxc_table_ordinal
                        The Paired CxC table - ordinal
the_rx2_table           The rx2 table
the_rxc_table           The rxc table
validateArguments       Validate arguments of a function
