R: Multiscale Codependence Analysis

# Multiscale Codependence Analysis

## Documentation for package ‘codep’ version 1.2-4

- DESCRIPTION file
- Package README

## Help Pages

codep-package | Multiscale Codependence Analysis
cdp-class | Class and Methods for Multiscale Codependence Analysis (MCA)
codep_PACKAGE | Multiscale Codependence Analysis
cthreshold | Familywise Type I Error Rate
Doubs | The Doubs Fish Data
Doubs.env | The Doubs Fish Data
Doubs.fish | The Doubs Fish Data
Doubs.geo | The Doubs Fish Data
dphi | Frequency Distributions for MCA Parametric Testing
dtau | Frequency Distributions for MCA Parametric Testing
eigenmap | Spatial Eigenvector Maps
eigenmap-class | Class and Methods for Spatial Eigenvector Maps
eigenmap.score | Spatial Eigenvector Maps
Euclid | Calculation of the Euclidean Distance
fitted.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
geodesics | Calculation of Geodesic Distances
LGDat | Legendre and Gallagher Synthetic Example
LGTransforms | Transformation for Species Abundance Data
MCA | Multiple-descriptors, Multiscale Codependence Analysis
minpermute | Number of Permutations for MCA
mite | The Oribatid Mite Data Set
mite.env | The Oribatid Mite Data Set
mite.geo | The Oribatid Mite Data Set
mite.species | The Oribatid Mite Data Set
parPermute.cdp | Multiple-descriptors, Multiscale Codependence Analysis
permute.cdp | Multiple-descriptors, Multiscale Codependence Analysis
plot.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
plot.eigenmap | Class and Methods for Spatial Eigenvector Maps
pphi | Frequency Distributions for MCA Parametric Testing
predict.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
print.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
print.eigenmap | Class and Methods for Spatial Eigenvector Maps
product-distribution | Frequency Distributions for MCA Parametric Testing
ptau | Frequency Distributions for MCA Parametric Testing
residuals.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
salmon | The St. Marguerite River Altantic Salmon Parr Transect
summary.cdp | Class and Methods for Multiscale Codependence Analysis (MCA)
test.cdp | Multiple-descriptors, Multiscale Codependence Analysis
weighting-functions | Weighting Functions for Spatial Eigenvector Map
wf.binary | Weighting Functions for Spatial Eigenvector Map
wf.Drayf1 | Weighting Functions for Spatial Eigenvector Map
wf.Drayf2 | Weighting Functions for Spatial Eigenvector Map
wf.Drayf3 | Weighting Functions for Spatial Eigenvector Map
wf.PCNM | Weighting Functions for Spatial Eigenvector Map
wf.RBF | Weighting Functions for Spatial Eigenvector Map
wf.sqrd | Weighting Functions for Spatial Eigenvector Map