birthDeathMCMC          Growth rate estimate using MCMC
cloneRate-package       The 'cloneRate' package.
coal_to_tree            Generate tree from coalescence times
exampleMutTrees         Example mutation tree data
exampleUltraTrees       Example ultrametric tree data
internalLengths         Growth rate estimate using the sum of internal
                        lengths
longitudinalData        Longitudinal validation data
maxLikelihood           Growth rate estimate using Maximum Likelihood
realCloneData           Real clone data from human blood
sharedMuts              Growth rate estimate using the sum of shared
                        mutations assuming a mutation tree
simMut                  Simulate mutation-based birth and death
                        branching trees
simUltra                Simulate ultrametric birth and death branching
                        trees
siteFrequency           Get site frequency spectrum of a tree
ultra2mut               Add poissonian mutations to an ultrametric
                        tree(s)
