R: Finds RNASeq Source Tissues Using In Situ Hybridisation Data

# Finds RNASeq Source Tissues Using In Situ Hybridisation Data

## Documentation for package ‘cellOrigins’ version 0.1.3

- DESCRIPTION file

## Help Pages

cellOrigins-package | Finding the most likely originating tissue(s) and developmental stage(s) of RNASeq data
BDGP_insitu_dmel_embryo | Patterns of gene expression in Drosophila melanogaster embryos
cellOrigins | Finding the most likely originating tissue(s) and developmental stage(s) of RNASeq data
diagnosticPlots | Diagnostic plots to explore seqVsInsitu results
diagnosticPlots.list | Diagnostic plots to explore seqVsInsitu results
diagnosticPlots.matrix | Diagnostic plots to explore seqVsInsitu results
discovery.identic | Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery.linear | Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery.log | Calculates discovery probability by RNA in situ hybridisation given a sequencing signal
discovery_probability | In situ discovery probability as a function of FPKM
iterating_seqVsInsitu | Faster comparisons between mixed tissue-specific RNA sequencing data and high-throughput RNA in situ hybridisation
prior.all_equal | Assign a prior probability to a combination of anatomical terms
prior.temporal_proximity_is_good | Assign a prior probability to a combination of anatomical terms
seqVsInsitu | Determine the most likely source(s) of a tissue-specific RNAseq dataset
vncMedianCoverage | Drosophila melanogaster embryo ventral nerve cord RNASeq coverage