Package: cauphy
Version: 1.0.3
Title: Trait Evolution on Phylogenies Using the Cauchy Process
Description: The Cauchy Process can model pulsed continuous trait evolution
    on phylogenies. The likelihood is tractable, and is used for parameter
    inference and ancestral trait reconstruction.
    See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
Authors@R: c(
    person("Gilles", "Didier", email = "gilles.didier@free.fr", role = c("aut", "cph")),
    person("Paul", "Bastide", email = "paul.bastide@cnrs.fr", role = c("aut", "cre")))
Depends: R (>= 3.5), ape (>= 5.5)
Imports: methods, robustbase, phylolm (>= 2.6.5), nloptr, pracma,
        foreach, doParallel, HDInterval
Suggests: covr, knitr, rmarkdown, spelling, geiger, testthat (>= 3.0.0)
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr
URL: https://gilles-didier.github.io/cauphy/
BugReports: https://github.com/gilles-didier/cauphy/issues
Language: en-US
NeedsCompilation: yes
Packaged: 2024-10-01 09:20:47 UTC; bastidep
Author: Gilles Didier [aut, cph],
  Paul Bastide [aut, cre]
Maintainer: Paul Bastide <paul.bastide@cnrs.fr>
Repository: CRAN
Date/Publication: 2024-10-01 13:30:05 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 12:02:11 UTC; unix
Archs: cauphy.so.dSYM
