cauphy  
===============

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The Cauchy Process to model trait evolution on phylogenies.

## Installation

Stable version on the [CRAN](https://CRAN.R-project.org/package=cauphy)

The development version can be installed from GitHub using the `remotes` package:
```R
install.packages("remotes")
remotes::install_github(repo = "gilles-didier/cauphy", ref = "dev")
```

## Documentation

See package documentation (references and vignettes) here: https://gilles-didier.github.io/cauphy/.

(Built with [`pkgdown`](https://github.com/r-lib/pkgdown)).

## Reference

Bastide, P. and Didier, G. (2023), The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution. *Systematic Biology*.
[doi:10.1093/sysbio/syad053](https://doi.org/10.1093/sysbio/syad053). [[bioRxiv](https://doi.org/10.1101/2023.04.05.535685)].

## Pronunciation

Pronounce `cauphy` like *coffee*, with a French accent: /ko.fi/.
