R: Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks

# Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks

## Documentation for package ‘cassandRa’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

CalcHostLevelCoverage | Estimated probabilities of missing links based on the host Level Coverage Deficit
ComputeCI | Compute Basic Confidence Intervals
CoverageEstimator | Coverage Estimator, using Chao1 Index, Turing-Good or Binomial depending on what is possible
CreateListObject | Generates a network list from a food web
FitAllModels | Fit all the models
FitBothMandC | Fit Matching-Centrality Model
FitCentrality | Fit Centrality Model
FitMatching | Fit Latent Trait (Matching Model)
FitSBM | Fit SBM Model
make_true_and_sample_web | Make an artificial bipartite networks with some properties of ecological networks, then sample from it
Optimiser | Optimiser wrapper for network models
Optimise_SBM | Custom optimiser function for SBM models
PlotFit | Plot the fitted network models
PlotRarefaction | Plot Metric Response To Network Rarefaction
PredictLinks | Generates a network list from a food web and fits all network models
RarefyNetwork | Recalculate Network Metrics With Rarefied Webs
SortResponseCategory | Adds a dataframe that defines each interaction as true positive, false negative or true negative
TestAllModels | Test the models by AUC
TestAUC | Test via AUC the predictive capacity of each model or combination of models