R: Bayesian Ordination and Regression AnaLysis

# Bayesian Ordination and Regression AnaLysis

## Documentation for package ‘boral’ version 2.0.3

- DESCRIPTION file

## Help Pages

boral-package | Bayesian Ordination and Regression AnaLysis (boral)
about.distributions | Distributions available in boral
about.lvs | Correlation structure for latent variables
about.ranefs | Including response-specific random intercepts in boral
about.ssvs | Stochastic search variable selection (SSVS) in boral
about.traits | Including species traits in boral
boral | Fitting boral (Bayesian Ordination and Regression AnaLysis) models
boral.default | Fitting boral (Bayesian Ordination and Regression AnaLysis) models
calc.condlogLik | Conditional log-likelihood for a fitted model
calc.logLik.lv0 | Log-likelihood for a model fitted with no latent variables
calc.marglogLik | Marginal log-likelihood for a fitted model
calc.varpart | Variance partitioning for a latent variable model
coefsplot | Caterpillar plots of the regression coefficients from a fitted model
create.life | \Sexpr[results=rd, stage=render]{lifecycle::badge("stable")} Simulate a Multivariate response matrix
ds.residuals | Dunn-Smyth Residuals for a fitted model
fitted.boral | Extract Model Fitted Values for an boral object
get.dic | Extract Deviance Information Criterion for a fitted model
get.enviro.cor | Extract covariances and correlations due to shared environmental responses
get.hpdintervals | Highest posterior density intervals for a fitted model
get.mcmcsamples | Extract MCMC samples from models
get.measures | Information Criteria for models
get.more.measures | Additional Information Criteria for models
get.residual.cor | Extract residual correlations and precisions from models
lvsplot | Plot the latent variables from a fitted model
make.jagsboralmodel | Write a text file containing a model for use into JAGS
make.jagsboralnullmodel | Write a text file containing a model for use into JAGS
plot.boral | Plots of a fitted boral object
predict.boral | Predict using a model
print.boral | Fitting boral (Bayesian Ordination and Regression AnaLysis) models
print.summary.boral | Summary of fitted boral object
ranefsplot | Caterpillar plots of response-specific random effects from a fitted model
simulate.boral | \Sexpr[results=rd, stage=render]{lifecycle::badge("stable")} Simulate a Multivariate response matrix
summary.boral | Summary of fitted boral object
tidyboral | Reformats output from a boral fit