about.distributions     Distributions available in boral
about.lvs               Correlation structure for latent variables
about.ranefs            Including response-specific random intercepts
                        in boral
about.ssvs              Stochastic search variable selection (SSVS) in
                        boral
about.traits            Including species traits in boral
boral                   Fitting boral (Bayesian Ordination and
                        Regression AnaLysis) models
boral-package           Bayesian Ordination and Regression AnaLysis
                        (boral)
calc.condlogLik         Conditional log-likelihood for a fitted model
calc.logLik.lv0         Log-likelihood for a model fitted with no
                        latent variables
calc.marglogLik         Marginal log-likelihood for a fitted model
calc.varpart            Variance partitioning for a latent variable
                        model
coefsplot               Caterpillar plots of the regression
                        coefficients from a fitted model
create.life             \Sexpr[results=rd,
                        stage=render]{lifecycle::badge("stable")}
                        Simulate a Multivariate response matrix
ds.residuals            Dunn-Smyth Residuals for a fitted model
fitted.boral            Extract Model Fitted Values for an boral object
get.dic                 Extract Deviance Information Criterion for a
                        fitted model
get.enviro.cor          Extract covariances and correlations due to
                        shared environmental responses
get.hpdintervals        Highest posterior density intervals for a
                        fitted model
get.mcmcsamples         Extract MCMC samples from models
get.measures            Information Criteria for models
get.more.measures       Additional Information Criteria for models
get.residual.cor        Extract residual correlations and precisions
                        from models
lvsplot                 Plot the latent variables from a fitted model
make.jagsboralmodel     Write a text file containing a model for use
                        into JAGS
make.jagsboralnullmodel
                        Write a text file containing a model for use
                        into JAGS
plot.boral              Plots of a fitted boral object
predict.boral           Predict using a model
ranefsplot              Caterpillar plots of response-specific random
                        effects from a fitted model
summary.boral           Summary of fitted boral object
tidyboral               Reformats output from a boral fit
