Package: bnpsd
Title: Simulate Genotypes from the BN-PSD Admixture Model
Version: 1.3.13
Authors@R: c(
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = c("aut"),
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Description: The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions.  The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters.  The BN-PSD model can be used to yield complex population structures.  This simulation approach is now extended to subpopulations related by a tree.  Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
Depends:
Imports: stats, ape, nnls
Suggests: popkin (>= 1.3.9), testthat, knitr, rmarkdown, RColorBrewer
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
URL: https://github.com/StoreyLab/bnpsd/
BugReports: https://github.com/StoreyLab/bnpsd/issues
NeedsCompilation: no
Packaged: 2021-08-23 13:54:05 UTC; viiia
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Repository: CRAN
Date/Publication: 2021-08-25 12:50:26 UTC
Built: R 4.6.0; ; 2026-04-26 00:00:35 UTC; unix
