Command                 R6 Class to prepare command parameters.
allele_counter          Run alleleCount
appmamba                Manage Environment with 'micromamba'
arg                     Deliver arguments of command
cellranger              Run cellranger
cmd_on_start            Schedule expressions to run
cmd_parallel            Execute a list of commands
cmd_run                 Execute command
cmd_wd                  Setup the context for the command
conda                   Run conda
exec                    Invoke a System Command
fastq_pair              FASTQ PAIR
gistic2                 Run GISTIC2
kraken2                 Running Kraken2
kraken_tools            KrakenTools is a suite of scripts to be used
                        alongside the Kraken, KrakenUniq, Kraken 2, or
                        Bracken programs.
make_command            Helper function to create new command.
perl                    Perl is a highly capable, feature-rich
                        programming language with over 36 years of
                        development.
pyscenic                Run pyscenic
python                  Python is a programming language that lets you
                        work quickly and integrate systems more
                        effectively.
samtools                Python is a programming language that lets you
                        work quickly and integrate systems more
                        effectively.
seqkit                  Run seqkit
trust4                  TRUST4: immune repertoire reconstruction from
                        bulk and single-cell RNA-seq data
