K.cross.3D              K-function cross-type in 3D
L.cross.3D              L-function cross-type in 3d
bwlabel3d               Binary segmentation in 3d
cmoments3d              Computes moments from image objects
cnnTest                 Permutation Test for cross-type nearest
                        neighbor distances
crossNN                 Compute cross-type nearest neighbor distances
distance2border         A function to compute the distance from spots
                        to borders of classes
filterImage3d           Apply filter to 3D images
folder.choose           Choose a folder interactively
img                     Display an image stack
intensity3D             Intensity of a 3d Dataset or a Model
mexican.hat.brush       Mexican hat brush to use with filter2
nearest.neighbour.distribution
                        Nearest neighbor distribution (D curve)
nearestClassDistance    Title Find distance to next neighbour of a
                        specific class
nearestClassDistances   Find all distances to next neighbor of all
                        classes
outside                 Segmentation of the background of 3D images
                        based on classes
plotNearestClassDistances
                        Title Plot nearest class distances
readBMP                 Read bitmap files
readClassTIF            Read TIF file with classes
readTIF                 Read tif stacks
segment                 Segmentation of 3D images using EM algorithms
segment.outside         Segmentation of the background of 3D images
                        based on automatic threshold
spots                   Find spots based on threshold and minimum total
                        intensity
standardize             Standardize images
table.n                 Cross Tabulation and Table Creation (including
                        empty classes)
testColoc               Permutation Test for cross-type nearest
                        neighbor distances
writeTIF                Writes image stack into a TIFF file. Wrapper
                        for writeTIFF
