AIC_from_data           Calculate AIC (Akaike's 'An Information
                        Criterion')
DI_plot                 Dispersion index
M_estimate              Calculate algB
QHampel                 Calculate QHampel
R_factor                Calculate R regression confidence factor
bar_plots               Bar plots dosimetry
calc.zValue.new         Calculate ZScore
calculate_aberr         Aberration calculation functions
calculate_aberr_IRR     Calculate IRR (this is the same as the
                        Odds-Ratio calculation in IAEA2011)
calculate_aberr_table   Calculate aberrations table
calculate_characteristic_limits
                        Characteristic limits function----------------
calculate_genome_factor
                        Calculate genomic conversion factor
calculate_model_stats   Calculate model statistics
calculate_table         Calculate the characteristic limits table
calculate_trans_rate_manual
                        Calculate manual translocation rate
calculate_trans_rate_sigurdson
                        Calculate Sigurdson's translocation rate
calculate_yield         Calculate yield from dose
calculate_yield_infimum
                        Calculate theoretical yield infimum
correct_boundary        Correct boundary of irradiated fractions to be
                        bounded by 0 and 1
correct_conf_int        Correct yield confidence interval
correct_negative_vals   Correct negative values
correct_yield           Correct yields if they are below the curve
curves_plot             Plot curves
dna_content_fractions_ihgsc
                        DNA Content Fractions of Human Chromosomes
                        (IHGSC)
dna_content_fractions_morton
                        DNA Content Fractions of Human Chromosomes
                        (Morton 1991)
dose_boxplot            Boxplot dose estimates
dose_estimation_mx      Prepare data to dose estimate using mixed
                        fields manual
estimate_hetero_mixed_poisson
                        Heterogeneous dose estimation (Mixed Poisson
                        model)
estimate_partial_body_dolphin
                        Partial-body dose estimation (Dolphin's method)
estimate_whole_body_delta
                        Whole-body dose estimation (delta method)
estimate_whole_body_merkle
                        Whole-body dose estimation (Merkle's method)
fit                     Perform dose-effect fitting algorithm
fit_glm_method          Perform GLM (Generalised Linear Model) fitting
fit_maxlik_method       Perform max-likelihood optimization fitting
fun.curve               Calculate curve
fun.estimate.criticality
                        Calculate absorbed dose for mixed fields
                        exposure
generate_plot_and_download
                        Plot at the UI and save
get_deltamethod_std_err
                        Get standard errors using delta method
include_help            Include Markdown help
load_manual_data        Load manual data
load_rds_data           Load and show rds files
load_rmd_report         Load RMarkdown report
plot_deviation_all      Plot Deviaition from ref dose all blind samples
plot_estimated_dose_curve
                        Plot dose estimation curve
plot_estimated_dose_curve_mx
                        Criticality Plot
plot_fit_dose_curve     Plot fit dose curve
plot_interlab_deviation
                        Plot deviation
plot_interlab_v2        Plot zscore v2
plot_triage             Plot triage
plot_triage_interlab    Plot triage interlab
plot_zscore_all         Plot Z-scores all blind samples
prepare_maxlik_count_data
                        Prepare count data for max-likelihood
                        optimization fitting
project_yield           Project yield into dose-effect fitting curve
protracted_g_function   Calculate protracted function G(x)
run_app                 Run the Shiny Application
summary_curve_tables    Summary and curve tables
u_test_plot             U-test
update_outputs          Update dose estimation box with yield values
yield_boxplot           Boxplot yield
yield_error_fun         Calculate yield error
yield_fun               Calculate yield
