R: Basic Sequence Processing Tool for Biological Data

# Basic Sequence Processing Tool for Biological Data

## Documentation for package ‘baseq’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

as_baseq_dna | S3 DNA Class
as_baseq_rna | S3 RNA Class
as_Biostrings | Bioconductor Bridge
calculate_assembly_stats | Assembly Stats
calculate_charge | Protein Net Charge
calculate_codon_usage | Codon Usage RSCU
calculate_identity | Sequence Identity
calculate_mw | Protein MW
calculate_pi | Protein pI
calculate_tm | Primer Tm
clean_file | Batch File Cleaner
clean_seq | Universal Sequence Cleaner
count_bases | Count Bases
count_kmers | K-mer Counting
count_pattern | Count Pattern
dna_to_protein | Translate DNA to Protein
dna_to_rna | DNA to RNA
fastq_to_fasta | Convert FASTQ to FASTA
filter_fastq_quality | Quality Filter FASTQ
find_cpg_islands | CpG Island Detection
find_longest_orf | Find Longest ORF
gc_content | GC Content
get_genetic_code | Get Genetic Code
plot_aa_composition | Plot AA Composition
plot_dotplot | Plot Dot Plot
plot_gc_skew | Plot GC Skew
plot_hydrophobicity | Plot Hydrophobicity
read_seq | Universal Sequence Reader
reverse_translate | Reverse Translation
rev_comp | Universal Reverse Complement
rna_to_dna | RNA to DNA
rna_to_protein | Translate RNA to Protein
sars_fragment | SARS-CoV-2 Genome Fragment
search_motif | Motif Searching
shuffle_sequence | Shuffle Sequence
simulate_digestion | Virtual Digestion
simulate_fasta | Simulate FASTA File
simulate_fastq | Simulate FASTQ File
simulate_pcr | PCR Simulator
simulate_sequence | Simulate Sequence
summarize_fasta | FASTA Summary
translate | Generic Translate
write_seq | Universal Sequence Writer