as_Biostrings           Bioconductor Bridge
as_baseq_dna            S3 DNA Class
as_baseq_rna            S3 RNA Class
calculate_assembly_stats
                        Assembly Stats
calculate_charge        Protein Net Charge
calculate_codon_usage   Codon Usage RSCU
calculate_identity      Sequence Identity
calculate_mw            Protein MW
calculate_pi            Protein pI
calculate_tm            Primer Tm
clean_file              Batch File Cleaner
clean_seq               Universal Sequence Cleaner
count_bases             Count Bases
count_kmers             K-mer Counting
count_pattern           Count Pattern
dna_to_protein          Translate DNA to Protein
dna_to_rna              DNA to RNA
fastq_to_fasta          Convert FASTQ to FASTA
filter_fastq_quality    Quality Filter FASTQ
find_cpg_islands        CpG Island Detection
find_longest_orf        Find Longest ORF
gc_content              GC Content
get_genetic_code        Get Genetic Code
plot_aa_composition     Plot AA Composition
plot_dotplot            Plot Dot Plot
plot_gc_skew            Plot GC Skew
plot_hydrophobicity     Plot Hydrophobicity
read_seq                Universal Sequence Reader
rev_comp                Universal Reverse Complement
reverse_translate       Reverse Translation
rna_to_dna              RNA to DNA
rna_to_protein          Translate RNA to Protein
sars_fragment           SARS-CoV-2 Genome Fragment
search_motif            Motif Searching
shuffle_sequence        Shuffle Sequence
simulate_digestion      Virtual Digestion
simulate_fasta          Simulate FASTA File
simulate_fastq          Simulate FASTQ File
simulate_pcr            PCR Simulator
simulate_sequence       Simulate Sequence
summarize_fasta         FASTA Summary
translate               Generic Translate
write_seq               Universal Sequence Writer
