baldur-package          The 'baldur' package.
calculate_mean_sd_trends
                        Calculate the Mean-Variance trend
empirical_bayes         Baldur's empirical Bayes Prior For The Mean In
                        Conditions
estimate_gamma_hyperparameters
                        Estimate Gamma hyperparameters for sigma
estimate_uncertainty    Estimate measurement uncertainty
fit_gamma_regression    Function for Fitting the Mean-Variance Gamma
                        Regression Models
fit_lgmr                Fit Latent Gamma Mixture Regression
infer_data_and_decision_model
                        Sample the Posterior of the data and decision
                        model and generate point estimates
lgmr_model              Latent Gamma Regression Model
lgmr_plotting           Visualization of LGMR models
plot_gamma              Function for plotting the gamma regression for
                        the mean-variance trend
plot_gamma_regression   Function for plotting the mean-variance gamma
                        regressions
plot_sa                 Plot the trend between the log fold-change and
                        sigma, coloring significant hits
plot_volcano            Plot the -log10(err) against the log
                        fold-change
psrn                    Normalize data to a pseudo-reference
ups                     Spiked-in data set of peptides
weakly_informative      Baldur's weakly informative prior for the mean
                        in conditions
yeast                   Spiked-in data set of reversibly oxidized
                        cysteines
