bbt_continue            Continue a BEAST2 run
bbt_delete_temp_files   Delete all the temporary files created by
                        bbt_run_from_model
bbt_run                 Run BEAST2
bbt_run_from_model      Run BEAST2
bbt_self_test           Do a self test to verify babette that works
                        correctly.
check_beast2_pkgs       Checks if 'bbt_run' has the 'BEAST2' packages
                        needed to process its arguments. Will stop if
                        not.
create_test_bbt_run_output
                        Get an example output of 'bbt_run' or
                        'bbt_run_from_model'.
create_test_ns_output   Create NS testing output
default_params_doc      This function does nothing. It is intended to
                        inherit is parameters' documentation.
get_alignment_ids_from_xml
                        Get the alignment IDs from one or more 'BEAST2'
                        XML input files.
get_babette_path        Get the full path of a file in the
                        'inst/extdata' folder
get_babette_paths       Get the full paths of files in the
                        'inst/extdata' folder
parse_beast2_output     Process the 'BEAST2' output dependent on
                        'BEAST2' package specifics
parse_beast2_output_to_ns
                        Parse BEAST2 NS output
plot_densitree          Draw multiple trees on top of one another.
prepare_file_creation   Internal function to prepare for 'BEAST2'
                        creating files
update_babette          Deprecated function.
