apex-package	apex-package
accessors	accessors
add.gaps	add.gaps
add.gaps,multidna-method	add.gaps
add.gaps,multiphyDat-method	add.gaps
add.gaps.generic	add.gaps
add.gaps.multidna	add.gaps
add.gaps.multiphyDat	add.gaps
apex	apex-package
concatenate	concatenate
concatenate,multidna-method	concatenate
concatenate,multiphyDat-method	concatenate
concatenate.generic	concatenate
concatenate.multidna	concatenate
concatenate.multiphyDat	concatenate
data.frameOrNULL	multidna
dist.multidna	dist.multidna
getLocusNames	accessors
getLocusNames,multidna	accessors
getLocusNames,multidna-method	accessors
getLocusNames,multiphyDat	accessors
getLocusNames,multiphyDat-method	accessors
getNumInd	accessors
getNumInd,multidna	accessors
getNumInd,multidna-method	accessors
getNumInd,multiphyDat	accessors
getNumInd,multiphyDat-method	accessors
getNumLoci	accessors
getNumLoci,multidna	accessors
getNumLoci,multidna-method	accessors
getNumLoci,multiphyDat	accessors
getNumLoci,multiphyDat-method	accessors
getNumSequences	accessors
getNumSequences,multidna	accessors
getNumSequences,multidna-method	accessors
getNumSequences,multiphyDat	accessors
getNumSequences,multiphyDat-method	accessors
getSequenceNames	accessors
getSequenceNames,multidna	accessors
getSequenceNames,multidna-method	accessors
getSequenceNames,multiphyDat	accessors
getSequenceNames,multiphyDat-method	accessors
getSequences	accessors
getSequences,multidna	accessors
getSequences,multidna-method	accessors
getSequences,multiphyDat	accessors
getSequences,multiphyDat-method	accessors
getTree	getTree
initialize,multidna-method	initialize-multidna-method
initialize,multidna-methods	initialize-multidna-method
initialize,multiphyDat-method	initialize-multiphyDat-method
initialize,multiphyDat-methods	initialize-multiphyDat-method
listOrNULL	multidna
multidna	multidna
multidna-class	multidna
multidna2alignment	multidna2alignment
multidna2genind	multidna2genind
multidna2multiphyDat	multidna2multiphyDat
multiphyDat	multiphyDat
multiphyDat-class	multiphyDat
multiphyDat2alignment	multidna2alignment
multiphyDat2genind	multidna2genind
multiphyDat2multidna	multidna2multiphyDat
new.multidna	initialize-multidna-method
new.multiphyDat	initialize-multiphyDat-method
plot,multidna-method	plot-multidna-method
plot.multidna	plot-multidna-method
read.multidna	readfiles
read.multiFASTA	readfiles
read.multiphyDat	readfiles
rm.gaps	rm.gaps
rm.gaps,multidna-method	rm.gaps
rm.gaps,multiphyDat-method	rm.gaps
rm.gaps.generic	rm.gaps
rm.gaps.multidna	rm.gaps
rm.gaps.multiphyDat	rm.gaps
setLocusNames<-	accessors
setLocusNames<-,multidna	accessors
setLocusNames<-,multidna-method	accessors
setLocusNames<-,multiphyDat	accessors
setLocusNames<-,multiphyDat-method	accessors
show,multidna-method	show-multidna-method
show,multiphyDat-method	show-multiphyDat-method
show.multidna	show-multidna-method
show.multiphyDat	show-multiphyDat-method
[,multidna,ANY,ANY,ANY-method	subset.multidna
[,multidna-method	subset.multidna
[,multiphyDat,ANY,ANY,ANY-method	subset.multidna
[,multiphyDat-method	subset.multidna
[.multidna	subset.multidna
[.multiphyDat	subset.multidna
