R: Antedependence Models for Longitudinal Data

# Antedependence Models for Longitudinal Data

## Documentation for package ‘antedep’ version 0.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D E F L N P Q R S T V

## -- A --

aic_cat | Bayesian and Akaike Information Criteria for Antedependence Fits
aic_gau | Bayesian and Akaike Information Criteria for Antedependence Fits
aic_inad | Bayesian and Akaike Information Criteria for Antedependence Fits
as.ts.antedep_sim | Convert antedependence simulation output to a time-series object
as.ts.cat_sim | Convert antedependence simulation output to a time-series object
as.ts.gau_sim | Convert antedependence simulation output to a time-series object
as.ts.inad_sim | Convert antedependence simulation output to a time-series object

## -- B --

Bell | The Bell distribution
bic_cat | Bayesian and Akaike Information Criteria for Antedependence Fits
bic_gau | Bayesian and Akaike Information Criteria for Antedependence Fits
bic_inad | Bayesian and Akaike Information Criteria for Antedependence Fits
bic_order_cat | BIC-Based Order Selection for Categorical AD Models
bic_order_gau | BIC-Based Order Selection for Gaussian AD Models
bic_order_inad | BIC-Based Order Selection for INAD Models
bolus_inad | Morphine Bolus Analgesia Counts

## -- C --

cattle_growth | Cattle Growth Data (Treatments A and B)
ci_cat | Confidence Intervals for Fitted Categorical AD Models
ci_gau | Confidence Intervals for Fitted Gaussian AD Models
ci_inad | Confidence Intervals for Fitted INAD Models
cochlear_implant | Cochlear Implant Speech Recognition Data
coef.antedep | Extract model coefficients from antedependence fits
coef.cat_fit | Extract model coefficients from antedependence fits
coef.gau_fit | Extract model coefficients from antedependence fits
coef.inad_fit | Extract model coefficients from antedependence fits
confint.antedep | Confidence Intervals for Antedependence Model Fits
confint.cat_fit | Confidence Intervals for Antedependence Model Fits
confint.gau_fit | Confidence Intervals for Antedependence Model Fits
confint.inad_fit | Confidence Intervals for Antedependence Model Fits

## -- D --

dbell | The Bell distribution
deviance.antedep | Deviance for Antedependence Model Fits
deviance.cat_fit | Deviance for Antedependence Model Fits
deviance.gau_fit | Deviance for Antedependence Model Fits
deviance.inad_fit | Deviance for Antedependence Model Fits

## -- E --

em_cat | EM Algorithm for Categorical AD Model Estimation
em_gau | EM Algorithm for Gaussian AD Model Estimation
em_inad | EM Algorithm for INAD Model Estimation

## -- F --

fitted.gau_fit | Fitted values and residuals for Gaussian AD fits
fit_cat | Fit Categorical Antedependence Model by Maximum Likelihood
fit_gau | Fit Gaussian Antedependence Model by Maximum Likelihood
fit_inad | Fit INAD Antedependence Model by Maximum Likelihood

## -- L --

labor_force_cat | Labor Force Longitudinal Categorical Data (Table 1)
logLik.antedep | Log-likelihood for antedependence model fits
logLik.cat_fit | Log-likelihood for antedependence model fits
logLik.gau_fit | Log-likelihood for antedependence model fits
logLik.inad_fit | Log-likelihood for antedependence model fits
logL_cat | Log-Likelihood for Categorical AD Models
logL_gau | Log-Likelihood for Gaussian AD Models
logL_inad | Log-Likelihood for INAD Models (with Missing Data Support)
logL_inad_i | INAD Log-Likelihood Contribution at Time i

## -- N --

nobs.antedep | Number of observations for antedependence model fits
nobs.cat_fit | Number of observations for antedependence model fits
nobs.gau_fit | Number of observations for antedependence model fits
nobs.inad_fit | Number of observations for antedependence model fits

## -- P --

partial_corr | Compute Intervenor-Adjusted Partial Correlation Matrix
pbell | The Bell distribution
plot.cat_fit | Plot marginal probabilities of a categorical AD fit
plot.gau_fit | Plot estimated parameters of a Gaussian AD fit
plot.inad_fit | Plot estimated parameters of an INAD fit
plot.partial_corr | Heatmap plot for a partial_corr object
plot_prism | PRISM Plot (Partial Residual Intervenor Scatterplot Matrix)
plot_profile | Profile Plot (Spaghetti Plot) for Longitudinal Data
print.cat_ci | Print method for cat_ci objects
print.cat_fit | Print method for cat_fit objects
print.cat_lrt | Print method for cat_lrt objects
print.gau_bic_order | Print method for BIC order selection
print.gau_ci | Print method for AD confidence intervals
print.gau_contrast_test | Print method for AD contrast test
print.gau_fit | Print Method for gau_fit Objects
print.gau_homogeneity_test | Print method for AD homogeneity test
print.gau_mean_test | Print method for AD mean test
print.gau_order_test | Print method for AD order test
print.homogeneity_tests_inad | Print method for homogeneity_tests_inad
print.inad_ci | Print method for INAD confidence intervals
print.inad_fit | Print Method for INAD Model Fits
print.test_homogeneity_inad | Print method for test_homogeneity_inad

## -- Q --

qbell | The Bell distribution

## -- R --

race_100km | 100km Race Split-Time Data
rbell | The Bell distribution
residuals.gau_fit | Fitted values and residuals for Gaussian AD fits
run_homogeneity_tests_inad | Run All Homogeneity Tests for INAD
run_order_tests_cat | Run All Pairwise Order Tests for Categorical AD
run_stationarity_tests_cat | Run All Stationarity-Related Tests for Categorical AD
run_stationarity_tests_gau | Run All Stationarity-Related Tests for Gaussian AD
run_stationarity_tests_inad | Run All Stationarity-Related Tests for INAD

## -- S --

simulate_cat | Simulate Categorical Antedependence Series
simulate_gau | Simulate Gaussian Antedependence Series
simulate_inad | Simulate INAD Antedependence Series
summary.cat_ci | Summary method for cat_ci objects
summary.cat_fit | Summary method for cat_fit objects
summary.gau_ci | Summary method for gau_ci objects
summary.gau_fit | Summary method for gau_fit objects
summary.inad_ci | Summary method for inad_ci objects
summary.inad_fit | Summary Method for INAD Model Fits
summary.partial_corr | Summary Method for Partial Correlation Objects

## -- T --

test_contrast_gau | Test Linear Hypotheses on the Mean Under Antedependence
test_homogeneity_cat | Likelihood Ratio Test for Homogeneity Across Groups (Categorical AD Data)
test_homogeneity_gau | Likelihood Ratio Test for Homogeneity Across Groups (Gaussian AD Data)
test_homogeneity_inad | Likelihood Ratio Test for Homogeneity Across Groups (INAD Data)
test_one_sample_gau | One-Sample Test for Mean Structure Under Antedependence
test_order_cat | Likelihood Ratio Test for Antedependence Order (Categorical AD Data)
test_order_gau | Likelihood Ratio Test for Antedependence Order (Gaussian AD Data)
test_order_inad | Likelihood Ratio Test for Antedependence Order (INAD Data)
test_stationarity_cat | Likelihood Ratio Test for Stationarity (Categorical AD Data)
test_stationarity_gau | Likelihood Ratio Test for Stationarity (Gaussian AD Data)
test_stationarity_inad | Likelihood Ratio Test for Stationarity (INAD Data)
test_timeinvariance_cat | Likelihood Ratio Test for Time-Invariance (Categorical Data)
test_two_sample_gau | Two-Sample Test for Mean Structure Under Antedependence

## -- V --

vcov.gau_fit | Variance-Covariance Matrix for Gaussian AD Fits