CFbinary                Matrices of Intra- and Inter-Specific
                        Similarities
DP                      Plot-to-plot functional or phylogenetic
                        dissimilarity
EH                      Faith Phylogenetic Diversity
EqRao                   Apportionment of Diversity
FPdivparam              Parametric Indices of Functional and
                        Phylogenetic Diversity
FunImbalance            Indices of functional imbalance
K                       Indices K, Kstar and Kw of Phylogenetic Signal
PADDis                  Functional Dissimilarity Measures for
                        Presence-Absence Data
QE                      Quadratic Entropy
RDMCCP16                Theoretical Data Set used in Ricotta et al.
                        (2016)
RP15EI                  Theoretical Data Set used in Ricotta and
                        Pavoine (2015) in Ecological Indicators
RP15JVS                 Theoretical Data Set used in Ricotta and
                        Pavoine (2015) in Journal of Vegetation Science
RPP16EE                 Theoretical Data Set used in Ricotta et al.
                        (2016) in Ecology and Evolution
Rentropy                Pavoine et al. (2017) functional or
                        phylogenetic entropy
RutorGlacier            Functional and phylogenetic composition of
                        plant communities along a primary succession on
                        glacial deposits.
abgdivparam             Apportionment of Parametric Indices of
                        Diversity
abgevodivparam          Apportionment of Parametric Indices of
                        Phylogenetic Diversity
adiv-package            Analysis of Diversity
aptree                  Hierarchical Partitioning of Evolutionary and
                        Ecological Patterns in the Organization of
                        Phylogenetically-Structured Species Assemblages
batcomm                 Bat Abundance and Phylogeny Along a Disturbance
                        Gradient in a Neotropical Rainforest
betaTreeUniqueness      Plot-to-plot functional or phylogenetic
                        dissimilarity and uniqueness
betaUniqueness          Algorithmic index of plot-to-plot functional
                        (or phylogenetic) dissimilarity and uniqueness
betastatjac             Multiple-Site Dissimilarity Measure for Species
                        Presence/Absence Data
birdData                Avian Communities along Successional Forest
                        Gradients
crossdpcoa_maineffect   Crossed-DPCoA
dbMANOVAspecies         Indicator species analysis in the framework of
                        multivariate analysis of variance
decdiv                  Decomposition of trait-based diversity along
                        the nodes of a phylogenetic tree
dislptransport          Algorithmic index of plot-to-plot functional
                        (or phylogenetic) dissimilarity
dissABC                 Phylogenetic and Functional Similarity between
                        Communities
dissRicotta             Plot-to-Plot Functional or Phylogenetic
                        Dissimilarity
distMS                  Marczewski-Steinhaus Coefficient
distinctAb              Abundance-based measures of species' rarity,
                        functional or phylogenetic distinctiveness and
                        functional or phylogenetic effective
                        originality
distinctDis             Dissimilarity-based Species' Originality
distinctTopo            Topology-based Species' Originality
distinctTree            Tree-based Species' Originality
distinctUltra           Ultrametric Tree-based Species' Originality
divparam                Parametric Indices of Species Diversity
dsimcom                 Functional or Phylogenetic Similarity between
                        Species and Communities
dspca                   Double similarity principal component analysis
eveparam                Parametric Indices of Species Evenness
evoCA                   Evolutionary Correspondence Analysis
evoNSCA                 Evolutionary Non-Symmetric Correspondence
                        Analysis
evodiss                 Pair-wise Phylogenetic Dissimilarities between
                        Communities
evodiss_family          A Family of Indices Dedicated to Pair-wise
                        Phylogenetic Dissimilarities between
                        Communities
evodiv                  Indices of Phylogenetic Diversity
evodivparam             Parametric Indices of Phylogenetic Diversity
evoeveparam             Parametric Indices of Phylogenetic evenness
evopcachord             Evolutionary Principal Component analyses
evouniparam             Parametric Indices of Phylogenetic Uniqueness
generalized_Tradidiss   Plot-to-plot dissimilarity taking account of
                        functional dissimilarities between species
optimEH                 Nee and May's Optimizing Process
orisaved                Maximal or Minimal Amount of Originality Saved
                        under Optimal Conditions
plot.phylo4d            Plots for phylogenetic tree and data
qDT                     Mean Diversity along a Phylogenetic Tree
qHdiv                   Biodiversity Measure that Includes Consistent
                        Interspecific and Intraspecific Components
randEH                  Amount of Evolutionary History Preserved when
                        Random Species are Saved
rare_Rao                Functional Rarefaction for Species Abundance
                        Data
rlqESLTP                Linking Patterns in Phylogeny, Traits, Abiotic
                        Variables and Space
rockfish                Rockfish Phylogenetic Diversity in Southern
                        California Bight
speciesdiv              Indices of Species Diversity
specieseve              Indices of Species Evenvess
treeUniqueness          Community-level phylogenetic (or functional)
                        redundancy
twoHmax                 Maximization of the Diversity Index TwoH
uniqueness              Functional Uniqueness and Functional Redundancy
                        of Biological Communities
