R: Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting

# Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting

## Documentation for package ‘WhiteLabRt’ version 1.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

WhiteLabRt-package | The 'WhiteLabRt' package.
convert_to_linelist | Convert Case Counts to a Line List
create_caseCounts | Create a Case Counts Data Frame
create_linelist | Create a Line List from Report and Onset Dates
out_list_demo | Sample back-calculation output
plot.backnow | Plot Estimates or Reproduction Numbers
plot.caseCounts | Plot Case Counts Over Time
run_backnow | Run Back Calculation and Estimate Reproduction Numbers
sample_cases | Sample cases
sample_dates | Sample dates
sample_location | Sample location
sample_multi_site | Sample multi site
sample_m_hier | Sample hierachical model output
sample_onset_dates | Sample onset dates
sample_report_dates | Sample report dates
si | Calculate a Serial Interval Distribution
spatialRt | Run Spatial R(t) estimation and Estimate Reproduction Numbers
transfer_matrix | Transfer matrix
WhiteLabRt | The 'WhiteLabRt' package.