Type: Package
Package: TFactSR
Title: Enrichment Approach to Predict Which Transcription Factors are
        Regulated
Version: 0.99.0
Authors@R: 
    person(given = "Atsushi",
           family = "Fukushima",
           email = "afukushima@gmail.com", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9015-1694"))
Description: R implementation of 'TFactS' to predict which are the 
    transcription factors (TFs), regulated in a biological condition based on
    lists of differentially expressed genes (DEGs) obtained from transcriptome
    experiments. This package is based on the 'TFactS' concept by 
    Essaghir et al. (2010) <doi:10.1093/nar/gkq149> and expands
    it. It allows users to perform 'TFactS'-like enrichment approach. The
    package can import and use the original catalogue file from the 'TFactS'
    as well as users' defined catalogues of interest that are not supported 
    by 'TFactS' (e.g., Arabidopsis).
License: GPL-3
URL: https://afukushima.github.io/TFactSR/
Depends: R (>= 4.3.0)
Imports: qvalue, stats
Suggests: BiocStyle, knitr, rmarkdown, spelling, testthat
VignetteBuilder: knitr
biocViews: Network, Software, DifferentialExpression, GeneTarget,
        GeneExpression, Microarray, RNASeq, Transcription,
        NetworkEnrichment
Encoding: UTF-8
RoxygenNote: 7.2.3
Language: en-US
NeedsCompilation: no
Packaged: 2023-08-31 00:35:51 UTC; fuku
Author: Atsushi Fukushima [aut, cre] (<https://orcid.org/0000-0001-9015-1694>)
Maintainer: Atsushi Fukushima <afukushima@gmail.com>
Repository: CRAN
Date/Publication: 2023-08-31 14:00:08 UTC
Built: R 4.6.0; ; 2026-04-25 22:48:20 UTC; unix
