R: Enrichment Approach to Predict Which Transcription Factors are Regulated

# Enrichment Approach to Predict Which Transcription Factors are Regulated

## Documentation for package ‘TFactSR’ version 0.99.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AtCatalog | A list of TF-target genes (TG) in Arabidopsis thaliana.
calculateEnrichmentTest | performs enrichment analysis
calculateEvalue | calculates E-value
calculateFDRBH | calculates FDR by Benjamini and Hochberg method
calculateQvalue | calculates Q-value
calculateRC | calculates Random Control (RC)
calculateTFactS | calculates TFactS
catalog | A list of TF-target genes (TG) in TFactS.
DEGs | An example list of DEGs from DEMO data in TFactS.
DEGs39 | An example list of 39 DEGs from DEMO data in TFactS.
example.df | An example result of enrichment analysis
example.list | An example list of result of enrichment analysis
extractTFTG | extracts transcription factor (TF) and target gene (TG) information
FASTcalculateRC | calculates Random Control (RC) fastly?
formatET | formats the result of enrichment test (ET)
formatRC | formats the result of Random Control (RC)
GenesUp_SH1H | An example list of 74 DEGs from AtGenExpress stress dataset.
TFactSR | TFactSR: A package for identifying critical transcription factors.