Find_regional_IDs       Find the spatial neighborhood Spot IDs
GetShuffledCT           Perform a Deranged Shuffle of Cell Types
Global_Permutations     Perform Global Permutations
LR_database             Identify Possible Ligand-Receptor Pairs for
                        Cell-Cell Communication
Local_Regional_Permutations
                        Perform Local and Regional Permutations
SpaCCI_global           Infer Cell-Cell Interactions on a Global Scale
SpaCCI_local            Infer Cell-Cell Interactions on a Local Scale
SpaCCI_region           Infer Cell-Cell Interactions in a Specified
                        Region
plot_SpaCCI_chordDiagram
                        Plot SpaCCI Results on Chord Diagram
plot_SpaCCI_heatmap     Plot SpaCCI Results on the heatmap Visualize
                        inferred significant cell-cell interactions
                        using a heatmap
plot_SpaCCI_local       Plot SpaCCI Localized Interaction Results
plot_SpaCCI_local_Strength
                        Plot SpaCCI Localized Interaction Strength
                        Results
plot_Strength_Seurat    Plot Localized Hotspot Strength Pattern on
                        Seurat Object
plot_Strength_localized
                        Plot Localized Hotspot Strength Pattern
plot_localized          Plot Localized Hotspot Pattern
plot_localized_Seurat   Plot Localized Hotspot Pattern on Seurat Object
possible_L_R_pairs_Cellinker
                        Identify Possible Ligand-Receptor Pairs for
                        Cell-Cell Communication
possible_L_R_pairs_ICELLNET
                        Identify Possible Ligand-Receptor Pairs for
                        Cell-Cell Communication
possible_L_R_pairs_cellchat
                        CellChat Database: Identify Possible
                        Ligand-Receptor Pairs for Cell-Cell
                        Communication
possible_L_R_pairs_cellphoneDB
                        Identify Possible Ligand-Receptor Pairs for
                        Cell-Cell Communication
possible_L_R_pairs_connectome
                        Identify Possible Ligand-Receptor Pairs for
                        Cell-Cell Communication
random_region           Select Closest Spatial IDs to a Center Point:
                        this is used for permutation
result_global           result_global data for SpaCCI
result_local            result_local data and spatial coordinates for
                        SpaCCI Local Regional Data
result_local_spatial_coords_df
                        Local Spatial Coordinates Data Frame
result_regional         result_regional data for SpaCCI
run_SpaCCI              Run SpaCCI Analysis
scPalette               Generate a Color Palette
test_data               Test data for SpaCCI
