SimInf-package	SimInf
abc	abc
abc,SimInf_model-method	abc
add_spatial_coupling_to_ldata	add_spatial_coupling_to_ldata
as.data.frame.SimInf_abc	as.data.frame.SimInf_abc
as.data.frame.SimInf_events	as.data.frame.SimInf_events
as.data.frame.SimInf_individual_events	as.data.frame.SimInf_individual_events
as.data.frame.SimInf_pmcmc	as.data.frame.SimInf_pmcmc
boxplot,SimInf_model-method	boxplot-SimInf_model-method
continue_abc	continue_abc
continue_abc,SimInf_abc-method	continue_abc
continue_pmcmc	continue_pmcmc
continue_pmcmc,SimInf_pmcmc-method	continue_pmcmc
C_code	C_code
distance_matrix	distance_matrix
edge_properties_to_matrix	edge_properties_to_matrix
events	events
events,SimInf_model-method	events
events_SEIR	events_SEIR
events_SIR	events_SIR
events_SIS	events_SIS
events_SISe	events_SISe
events_SISe3	events_SISe3
gdata	gdata
gdata,SimInf_model-method	gdata
gdata<-	gdata-set
gdata<-,SimInf_model-method	gdata-set
get_individuals	get_individuals
get_individuals,SimInf_individual_events-method	get_individuals
indegree	indegree
individual_events	individual_events
lambertW0	lambertW0
ldata	ldata
ldata,SimInf_model-method	ldata
length,SimInf_pmcmc-method	length-SimInf_pmcmc-method
logLik,SimInf_pfilter-method	logLik-SimInf_pfilter-method
mparse	mparse
nodes	nodes
node_events	node_events
node_events,SimInf_individual_events-method	node_events
n_compartments	n_compartments
n_compartments,SimInf_model-method	n_compartments
n_generations	n_generations
n_generations,SimInf_abc-method	n_generations
n_nodes	n_nodes
n_nodes,SimInf_model-method	n_nodes
n_nodes,SimInf_pfilter-method	n_nodes
n_nodes,SimInf_pmcmc-method	n_nodes
n_replicates	n_replicates
n_replicates,SimInf_model-method	n_replicates
outdegree	outdegree
package_skeleton	package_skeleton
pairs,SimInf_model-method	pairs-SimInf_model-method
pfilter	pfilter
pfilter,SimInf_model-method	pfilter
plot,SimInf_abc-method	plot-SimInf_abc-method
plot,SimInf_events-method	plot-SimInf_events-method
plot,SimInf_individual_events-method	plot-SimInf_individual_events-method
plot,SimInf_model-method	plot
plot,SimInf_pfilter-method	plot-SimInf_pfilter-method
plot,SimInf_pmcmc-method	plot-SimInf_pmcmc-method
pmcmc	pmcmc
pmcmc,SimInf_model-method	pmcmc
prevalence	prevalence
prevalence,SimInf_model-method	prevalence-SimInf_model-method
prevalence,SimInf_pfilter-method	prevalence-SimInf_pfilter-method
prevalence,SimInf_pmcmc-method	prevalence-SimInf_pmcmc-method
punchcard<-	punchcard-set
punchcard<-,SimInf_model-method	punchcard-set
run	run
run,SEIR-method	run
run,SimInf_abc-method	run
run,SimInf_model-method	run
run,SIR-method	run
run,SIS-method	run
run,SISe-method	run
run,SISe3-method	run
run,SISe3_sp-method	run
run,SISe_sp-method	run
SEIR	SEIR
SEIR-class	SEIR-class
select_matrix	select_matrix
select_matrix,SimInf_model-method	select_matrix
select_matrix<-	select_matrix-set
select_matrix<-,SimInf_model-method	select_matrix-set
set_num_threads	set_num_threads
shift_matrix	shift_matrix
shift_matrix,SimInf_model-method	shift_matrix
shift_matrix<-	shift_matrix-set
shift_matrix<-,SimInf_model-method	shift_matrix-set
show,SimInf_abc-method	show-SimInf_abc-method
show,SimInf_events-method	show-SimInf_events-method
show,SimInf_individual_events-method	show-SimInf_individual_events-method
show,SimInf_model-method	show-SimInf_model-method
show,SimInf_pfilter-method	show-SimInf_pfilter-method
show,SimInf_pmcmc-method	show-SimInf_pmcmc-method
SimInf	SimInf
SimInf_abc-class	SimInf_abc-class
SimInf_events	SimInf_events
SimInf_events-class	SimInf_events-class
SimInf_individual_events-class	SimInf_individual_events-class
SimInf_model	SimInf_model
SimInf_model-class	SimInf_model-class
SimInf_pfilter-class	SimInf_pfilter-class
SimInf_pmcmc-class	SimInf_pmcmc-class
SIR	SIR
SIR-class	SIR-class
SIS	SIS
SIS-class	SIS-class
SISe	SISe
SISe-class	SISe-class
SISe3	SISe3
SISe3-class	SISe3-class
SISe3_sp	SISe3_sp
SISe3_sp-class	SISe3_sp-class
SISe_sp	SISe_sp
SISe_sp-class	SISe_sp-class
summary,SimInf_abc-method	summary-SimInf_abc-method
summary,SimInf_events-method	summary-SimInf_events-method
summary,SimInf_individual_events-method	summary-SimInf_individual_events-method
summary,SimInf_model-method	summary-SimInf_model-method
summary,SimInf_pfilter-method	summary-SimInf_pfilter-method
summary,SimInf_pmcmc-method	summary-SimInf_pmcmc-method
trajectory	trajectory
trajectory,SimInf_model-method	trajectory-SimInf_model-method
trajectory,SimInf_pfilter-method	trajectory-SimInf_pfilter-method
trajectory,SimInf_pmcmc-method	trajectory-SimInf_pmcmc-method
u0	u0
u0,SimInf_individual_events-method	u0
u0,SimInf_model-method	u0
u0<-	u0-set
u0<-,SimInf_model-method	u0-set
u0_SEIR	u0_SEIR
u0_SIR	u0_SIR
u0_SIS	u0_SIS
u0_SISe	u0_SISe
u0_SISe3	u0_SISe3
v0<-	v0-set
v0<-,SimInf_model-method	v0-set
