R: Analysis of Functional and Phylogenetic Patterns in Metacommunities

# Analysis of Functional and Phylogenetic Patterns in Metacommunities

## Documentation for package ‘SYNCSA’ version 1.3.5

- DESCRIPTION file

## Help Pages

ADRS | Artificial Data for Run SYNCSA
belonging | Degree of belonging of species
cent.norm | Matrix centralization and standardization
coinertia.partial.syncsa | Co-inertia and Partial Co-inertia correlations.
coinertia.syncsa | Co-inertia and Partial Co-inertia correlations.
CollectNames | Collect names an entire list
cor.matrix | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix.bf | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix.partial | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix.rao | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
flona | Hypothetical data for SYNCSA
matmult.syncsa | Matrix multiplication with missing data
matrix.p | Matrix P
matrix.t | Matrix T
matrix.w.transformation | Community data transformation
matrix.x | Matrix X
optimal | Searching for optimal traits
organize.syncsa | Function for organize data for Package SYNCSA
part.cor | First-order partial correlation coefficient
pca | Principal Components Analysis (PCA) with NA (missing data)
permut.row.matrix | Permutate rows in a matrix
permut.vector | Permutate a vector
plot.pcasyncsa | Principal Components Analysis (PCA) with NA (missing data)
print.optimal | Searching for optimal traits
print.pcasyncsa | Principal Components Analysis (PCA) with NA (missing data)
print.syncsa | SYNCSA
pro.matrix | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
pro.matrix.bf | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
pro.matrix.partial | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
pro.matrix.rao | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
procrustes.partial.syncsa | Procrustes and Partial Procrustes correlations.
procrustes.syncsa | Procrustes and Partial Procrustes correlations.
ProgressBAR | Text Progress Bar
rao.diversity | Rao's quadratic entropy
rv.matrix | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
rv.matrix.bf | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
rv.matrix.partial | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
rv.matrix.rao | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
SYNCSA | SYNCSA
syncsa | SYNCSA
syncsa.obs | SYNCSA
var.dummy | Generate dummy variable
var.type | Check the type of variables