PALM                    Population Allele Locating Mapmaker
checkAlleleSyntax       Check allele syntax
checkHaplotypeSyntax    Check haplotype syntax
checkLocusDataset       Check locus validity and if the locus is
                        present in the user specified dataset
checkMotifSyntax        Check motif syntax
checkPosition           Checks if amino acid positions in motif exist
dataSubset              Dataset manipulation for motifs and alleles
dataSubsetHaplo         Dataset manipulation for haplotypes
findMotif               Returns an alignment data frame of alleles that
                        share a specific amino acid motif
getVariantInfo          Locus and allele or motif extraction for
                        motifs, allele, or haplotype mapping
isNamePresent           Checks if name portion of entered variant is
                        present
mock_haplotype_dataset
                        Mock Haplotype Dataset
readFilename            Designates dataset by either reading in file
                        the user has provided, or using the Solberg
                        dataset or mock haplotype dataset
solberg_dataset         Solberg Dataset
validateVariantType     validateVariantType
verifyAlleleANHIG       Verifies the allele entered is present in the
                        IMGT protein alignments
verifyAlleleANHIGHaplo
                        Verifies the alleles in entered haplotype are
                        present in IMGTprotalignments
verifyAlleleDataset     Verifies the allele entered is present in
                        specified dataset
