Package: SPACO
Title: Spatial Component Analysis for Spatial Sequencing Data
Version: 1.0.1
Authors@R: 
  person("David", "Köhler", , "koehler@imbie.uni-bonn.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0006-0027-4046"))
Description: Spatial components offer tools for dimension reduction and 
  spatially variable gene detection for high dimensional spatial transcriptomics 
  data. Construction of a projection onto low-dimensional feature space of 
  spatially dependent metagenes offers pre-processing to clustering, testing for 
  spatial variability and denoising of spatial expression patterns. For more 
  details, see Koehler et al. (2026) <doi:10.1093/bioinformatics/btag052>.
Encoding: UTF-8
RoxygenNote: 7.3.3
LinkingTo: Rcpp, RcppEigen
Depends: R (>= 4.2.3)
Imports: ggplot2, Seurat (>= 5.3.0), tibble, ggforce, methods, rARPACK,
        tidyr, mgcv, scales, Matrix (>= 1.5)
License: MIT + file LICENSE
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2026-03-31 14:31:19 UTC; koehler
Author: David Köhler [aut, cre] (ORCID:
    <https://orcid.org/0009-0006-0027-4046>)
Maintainer: David Köhler <koehler@imbie.uni-bonn.de>
Repository: CRAN
Date/Publication: 2026-03-31 22:40:38 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 21:44:45 UTC; unix
Archs: SPACO.so.dSYM
