R: Similarity Network Fusion

# Similarity Network Fusion

## Documentation for package ‘SNFtool’ version 2.3.1

- DESCRIPTION file

## Help Pages

affinityMatrix | Affinity matrix calculation
calNMI | Mutual Information calculation
chiDist2 | Pairwise Chi-squared distances
concordanceNetworkNMI | Concordance Network NMI calculation
Data1 | Data1
Data2 | Data2
dataL | dataL
displayClusters | Plot given similarity matrix by clusters
displayClustersWithHeatmap | Display the similarity matrix by clusters with some sample information
dist2 | Pairwise squared Euclidean distances
estimateNumberOfClustersGivenGraph | Estimate Number Of Clusters Given Graph
getColorsForGroups | Obtaining a vector of colors from a numeric vector of group
groupPredict | Group Predict
heatmapPlus | Display heatmap for clusters
label | Labels for dataL dataset
plotAlluvial | Plot Alluvial
rankFeaturesByNMI | Rank Features by NMI
SNF | Similarity Network Fusion
spectralClustering | Spectral Clustering
standardNormalization | Standard Normalization