do_ActivityHeatmap      Compute affinity of gene sets to cell
                        populations using decoupleR.
do_AlluvialPlot         Generate Alluvial plots.
do_BarPlot              Create Bar Plots.
do_BeeSwarmPlot         BeeSwarm plot.
do_BoxPlot              Generate Box Plots.
do_CNVHeatmap           Display CNV scores from inferCNV as Feature
                        Plots.
do_CellularStatesPlot   Cellular States plot.
do_ChordDiagramPlot     Generate a Chord diagram.
do_ColorBlindCheck      Generate colorblind variations of a given color
                        palette.
do_ColorPalette         Generate color scales based on a value.
do_CorrelationHeatmap   Create correlation matrix heatmaps.
do_DimPlot              Wrapper for DimPlot.
do_DotPlot              This function is a wrapper for DotPlot. It
                        provides most of its functionalities while
                        adding extra. You can
do_EnrichmentHeatmap    Create enrichment scores heatmaps.
do_ExpressionHeatmap    Create heatmaps of averaged expression by
                        groups.
do_FeaturePlot          Wrapper for FeaturePlot.
do_GroupwiseDEHeatmap   Compute a dotplot with the results of a
                        group-wise DE analysis.
do_LigandReceptorPlot   Visualize Ligand-Receptor analysis output.
do_LoadingsHeatmap      Compute a heatmap summary of the top and bottom
                        genes in the PCA loadings for the desired PCs
                        in a Seurat object.
do_MetadataHeatmap      Compute a heatmap of categorical variables.
do_NebulosaPlot         Wrapper for Nebulosa::plot_density in Seurat.
do_PackageReport        Generate a status report of SCpubr and its
                        dependencies.
do_PathwayActivityHeatmap
                        Plot Pathway Activities from decoupleR using
                        Progeny prior knowledge.
do_RankedEnrichmentHeatmap
                        Compute a heatmap of enrichment of gene sets on
                        the context of a dimensional reduction
                        component.
do_RankedExpressionHeatmap
                        Compute a heatmap of expression of genes on the
                        context of a dimensional reduction component.
do_RidgePlot            Create ridge plots.
do_SCEnrichmentHeatmap
                        Perform a single-cell-based heatmap showing the
                        enrichment in a list of gene sets.
do_SCExpressionHeatmap
                        Perform a single-cell-based heatmap showing the
                        expression of genes.
do_StripPlot            Generate a Strip plot.
do_TFActivityHeatmap    Plot TF Activities from decoupleR using
                        Dorothea prior knowledge.
do_TermEnrichmentPlot   Display the enriched terms for a given list of
                        genes.
do_ViolinPlot           Wrapper for VlnPlot.
do_VolcanoPlot          Compute a Volcano plot out of DE genes.
do_WafflePlot           Display the enriched terms for a given list of
                        genes.
human_chr_locations     Chromosome arm locations for human genome
                        GRCh38.
