R: Network-Based Interpretation of Changes in Compositional Data

# Network-Based Interpretation of Changes in Compositional Data

## Documentation for package ‘SARP.compo’ version 0.1.8

- DESCRIPTION file

## Help Pages

alpha | Estimate the power and the type-I error of the disjoint-subgraphs method
anva1.fpc | Utility functions to obtain p-values from tests on individual ratios
anva1vi.fpc | Utility functions to obtain p-values from tests on individual ratios
anva_SC.fpc | Utility functions to obtain p-values from tests on individual ratios
arbre.Mp | Grouping composants by changes in cut-off separation
BpLi_J2 | Circadian Genes Expression in Bipolar Disorder Patients
BpLi_J4 | Circadian Genes Expression in Bipolar Disorder Patients
calc.rapports | Compute all pairwise ratios of a set of variables
choisir.seuil | Cut-off selection by simulations
choisir.seuil.equiv | Cut-off selection by simulations, in the context of equivalence tests
conversions | Convert between matrix and data-frame format
coupures.Mp | Finding cut-offs for graph disjonctions
Cq.reference | Expression level of candidate reference genes
create.DFp | Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
create.Fp | Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
create.graphe | Create a graph using a set of p-values from pairwise tests
create.Mp | Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
creer.DFp | Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
creer.Fp | Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
creer.Mp | Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
creer_data.frame | Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
creer_graphe | Create a graph using a set of p-values from pairwise tests
creer_matrice | Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
DFp.Mp | Convert between matrix and data-frame format
distrib.distances | Simulate the distribution of maximal minimal distances in a random graph
equiv.fpc | Utility function to obtain p-value for equivalence tests on individual ratios
equivalence | Utility function to obtain p-value for equivalence tests on individual ratios
estimer.alpha | Estimate the power and the type-I error of the disjoint-subgraphs method
estimer.puissance | Estimate the power and the type-I error of the disjoint-subgraphs method
fichier | Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
GADL1 | Gene expression change in bipolar disorder
gadl1 | Gene expression change in bipolar disorder
generef | Expression level of candidate reference genes
grf.DFp | Create a graph using a set of p-values from pairwise tests
grf.Fp | Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
grf.Mp | Create a graph using a set of p-values from pairwise tests
kw.fpc | Utility functions to obtain p-values from tests on individual ratios
modele | Create a compositional model for simulations
modele_compo | Create a compositional model for simulations
Mp.DFp | Convert between matrix and data-frame format
plot.Arbre | Grouping composants by changes in cut-off separation
plot.Coupures | Finding cut-offs for graph disjonctions
plot.SARPcompo.H0 | Cut-off selection by simulations
plot.SARPcompo.modele | Create a compositional model for simulations
poteries | Composition of Roman poteries
print.SARPcompo.H0 | Cut-off selection by simulations
puissance | Estimate the power and the type-I error of the disjoint-subgraphs method
rls.fpc | Utility functions to obtain p-values from tests on individual ratios
SCH23390 | Effect of MDMA and SCH23390 on gene expression
sch23390 | Effect of MDMA and SCH23390 on gene expression
student.fpc | Utility functions to obtain p-values from tests on individual ratios
tests | Utility functions to obtain p-values from tests on individual ratios