R: Stitching and Analyzing Root Scans

# Stitching and Analyzing Root Scans

## Documentation for package ‘RootscanR’ version 0.0.1

- DESCRIPTION file

## Help Pages

applyImgMask | Depict images with masking layers
blendImgs | Stitch images
checkInput | Check if the root scan directories contain everything necessary
cm2px | Functions for converting pixels and centimeters
combineStatsWithDL | Get an overview of the given root scans
createDepthLayerMasks | Create masking layers for the depth layers
dissectionLine | Create masking layers for the depth layers
findAvgOverlap | Find average image overlaps
findAvgSurface | Find the average surface level
findOverlap | Find image overlaps
findSurface | Find the surface level and split images
getDepthLayerInfo | Extract depth layer information from root scans
getDepthLayerInfo_par | Extract depth layer information from root scans (parallel)
getNeighborCoords | Get coordinates of neighbors of specified distance
getOverviewInput | Get an overview of the given root scans
imageCorr | Find image overlaps
kimuraLength | Computation of the Kimura length
ppcm2ppi | Functions for converting resolutions: ppi and ppcm
ppi2ppcm | Functions for converting resolutions: ppi and ppcm
px2cm | Functions for converting pixels and centimeters
showImgMask | Depict images with masking layers
skelPxWidth | Count skeleton root pixels with certain widths in the base root image
splitImgHoriz | Find the surface level and split images
stitchImgs | Stitch images