R: Geostatistical Modeling of Spatially Referenced Data

# Geostatistical Modeling of Spatially Referenced Data

## Documentation for package ‘RiskMap’ version 1.0.0

- DESCRIPTION file
- Package README

## Help Pages

abund_sma | Female Culex pipiens abundance (collections) in the Sacramento Metropolitan Area
anopheles | Anopheles mosquitoes in Southern Cameroon
assess_pp | Assess Predictive Performance via Spatial Cross-Validation
assess_sim | Assess Simulations
check_mcmc | Check MCMC Convergence for Spatial Random Effects
coef.RiskMap | Extract Parameter Estimates from a "RiskMap" Model Fit
compute_ID_coords | Compute Unique Coordinate Identifiers
convex_hull_sf | Convex Hull of an sf Object
create_grid | Create Grid of Points Within Shapefile
dast | Fitting of decay-adjusted spatio-temporal (DAST) model
dist_summaries | Summaries of the distances
galicia | Heavy metal biomonitoring in Galicia
glgpm | Estimation of Generalized Linear Gaussian Process Models
glgpm_sim | Simulation from Generalized Linear Gaussian Process Models
gp | Gaussian Process Model Specification
infect_sma | West Nile virus pool tests for female *Culex pipiens* in the Sacramento Metropolitan Area
italy_sim | Simulated data-set on the Italian peninsula
Laplace_sampling_MCMC | Laplace-sampling MCMC for Generalized Linear Gaussian Process Models
liberia | River-blindness in Liberia
loaloa | Loa loa prevalence data from 197 village surveys
malkenya | Malaria Transmission in the Western Kenyan Highlands
malnutrition | Malnutrition in Ghana
matern.grad.phi | First Derivative with Respect to phi
matern.hessian.phi | Second Derivative with Respect to phi
matern_cor | Matern Correlation Function
maxim.integrand | Maximization of the Integrand for Generalized Linear Gaussian Process Models
plot.RiskMap_pred_target_grid | Plot Method for RiskMap_pred_target_grid Objects
plot.RiskMap_pred_target_shp | Plot Method for RiskMap_pred_target_shp Objects
plot_AnPIT | Plot Calibration Curves (AnPIT / PIT) from Spatial Cross-Validation
plot_mda | Plot the estimated MDA impact function
plot_score | Plot Spatial Scores for a Specific Model and Metric
plot_sim_surf | Plot simulated surface data for a given simulation
plot_s_variogram | Plotting the empirical variogram
pred_over_grid | Prediction of the random effects components and covariates effects over a spatial grid using a fitted generalized linear Gaussian process model
pred_target_grid | Predictive Target Over a Regular Spatial Grid
pred_target_shp | Predictive Targets over a Shapefile (grid-aggregated)
print.summary.RiskMap | Print Summary of RiskMap Model
print.summary.RiskMap.sim.res | Print Simulation Results
print.summary.RiskMap.spatial.cv | Print Summary of RiskMap Spatial Cross-Validation Scores
propose_utm | EPSG of the UTM Zone
re | Random Effect Model Specification
set_control_sim | Set Control Parameters for Simulation
summary.RiskMap | Summarize Model Fits
summary.RiskMap.sim.res | Summarize Simulation Results
summary.RiskMap.spatial.cv | Summarize Cross-Validation Scores for Spatial RiskMap Models
surf_sim | Simulate surface data based on a spatial model
s_variogram | Empirical variogram
to_table | Generate LaTeX Tables from RiskMap Model Fits and Validation
tz_covariates | Covariates Dataset for Malaria Prediction in Tanzania
tz_malaria | Malaria Dataset from Tanzania Demographic Health Surveys 2015
update_predictors | Update Predictors for a RiskMap Prediction Object